HsaINT0050060 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11607520-11608502:+
Coord C1 exon
chr17:11607520-11607759
Coord A exon
chr17:11607760-11608341
Coord C2 exon
chr17:11608342-11608502
Length
582 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCTACCACTCTCTCTTTAGGTA
3' ss Score
11.41
Exon sequences
Seq C1 exon
GTGGCCCTGACCTGTACTCAGATCTGGTGGACAACAGAAGTGGGCATGGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTATTATAAGAAGCAAGTGGCCCAGCTCAAAACCCTTATCACCATGCTGATTGGCCAGCTCTCCAAGGGAGACCGGCAGAAGATTATGACTATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAGAAG
Seq A exon
GTGGGTCCCAAACATCCAGGGATGCCCACTTTTGTGTACAGCTACACTGAGAACAGCACATACAGCCAAAATATGGGGGCCCCAGGGTCTGTACAGCACTGACCAGACAGCTGGGGGAGGATCACAGTGGCTGCTCCTACTTTTTTTTTTTTTTTTTTGAGATTGAGTTTCGCTCTTATTGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACCGCAACCTCCACCTCTCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTACCACCACCCCCAGCTAACTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATAGAACCCTGTAATCAGAGCAGCTTGTGCTTTCTATGCTGTGGTGGCCACAGCATGCTGCACACTTTAGCAGCAGTCAACAGCCAAGGCATCAGACCCCTATGTGTCTTGTGGCCAAGGGACTACCTGCTGCCTATGATTCACCCACCTACTCTACCACTCTCTCTTTAG
Seq C2 exon
GTAGACAATGCCCAGGCTTTCCTCTGGCTGTCTCAGCTGCGCCATCGTTGGGATGACGAGGTCAAACACTGCTTTGCCAACATCTGTGATGCCCAGTTTTTGTATTCCTATGAGTACCTGGGAAACACACCTCGCTTGGTGATCACACCTTTGACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGTGGGCATGGCATT
R:
CGAGGTGTGTTTCCCAGGTAC
Band lengths:
342-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)