Special

HsaINT0050060 @ hg19

Intron Retention

Gene
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11607520-11608502:+
Coord C1 exon
chr17:11607520-11607759
Coord A exon
chr17:11607760-11608341
Coord C2 exon
chr17:11608342-11608502
Length
582 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCTACCACTCTCTCTTTAGGTA
3' ss Score
11.41
Exon sequences
Seq C1 exon
GTGGCCCTGACCTGTACTCAGATCTGGTGGACAACAGAAGTGGGCATGGCATTTGCCAGGCTGGAGGAAGGCTATGAGAGTGCCATGAAGGACTATTATAAGAAGCAAGTGGCCCAGCTCAAAACCCTTATCACCATGCTGATTGGCCAGCTCTCCAAGGGAGACCGGCAGAAGATTATGACTATATGCACCATCGATGTGCATGCCCGGGATGTGGTAGCCAAGATGATTGCTCAGAAG
Seq A exon
GTGGGTCCCAAACATCCAGGGATGCCCACTTTTGTGTACAGCTACACTGAGAACAGCACATACAGCCAAAATATGGGGGCCCCAGGGTCTGTACAGCACTGACCAGACAGCTGGGGGAGGATCACAGTGGCTGCTCCTACTTTTTTTTTTTTTTTTTTGAGATTGAGTTTCGCTCTTATTGCCCAGGCTGGAGTGCAATGGCACGATCTCGGCTCACCGCAACCTCCACCTCTCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGTACCACCACCCCCAGCTAACTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCGGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATAGAACCCTGTAATCAGAGCAGCTTGTGCTTTCTATGCTGTGGTGGCCACAGCATGCTGCACACTTTAGCAGCAGTCAACAGCCAAGGCATCAGACCCCTATGTGTCTTGTGGCCAAGGGACTACCTGCTGCCTATGATTCACCCACCTACTCTACCACTCTCTCTTTAG
Seq C2 exon
GTAGACAATGCCCAGGCTTTCCTCTGGCTGTCTCAGCTGCGCCATCGTTGGGATGACGAGGTCAAACACTGCTTTGCCAACATCTGTGATGCCCAGTTTTTGTATTCCTATGAGTACCTGGGAAACACACCTCGCTTGGTGATCACACCTTTGACTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF127742=AAA_6=PU(8.2=35.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAAGTGGGCATGGCATT
R:
CGAGGTGTGTTTCCCAGGTAC
Band lengths:
342-924
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development