BtaINT0050837 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31195096-31198600:+
Coord C1 exon
chr19:31195096-31195260
Coord A exon
chr19:31195261-31198459
Coord C2 exon
chr19:31198460-31198600
Length
3199 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTCTTGATTTTTCTAACAGGTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
TCAGAGCTCACAAAGCAGCAGAATGGGTTCAAAATCACCCTCAAAACATTGGAAGACAACCTGCTGTCTCGCCTCTCCTCGGCCTCCGGGAACTTCCTGGGAGAAACGGCCCTGGTGGAGAACCTTGAGATCACCAAGCAGACTGCCGCGGAAGTTGAGAAAAAG
Seq A exon
GTAAGACCCGGCAGCCTGGGCTGGGGTGGGTGGGGGCGGGCAGAGGCCCTCCTCCTTGTCCCTGAGTCCACTGTCCAGGGACAAATGTCAGAGTAAGAGATGGCTGATCCATCTTCCTGAGATTCTCCTGGAAAGTAGAGCTCGGCAGGATTCCTGAAATGAGCACCTCACTGCCTGCATGACAGAGCCCTCACTCCCTATAAAATGCTGTTGACAACTCTACTCTGCAGAAGTTTGACTGGCACTTAGATCTGTTCAGGAAATAGTGGCTCAAACTGAGTACCTTAGTGAGTCCATGGAGTTGCCCTGAAGCTAAGGAATCACGCTGGTATACAAGTACATGGCTGCACCCCCAGAAAACCCACAACCTGCAAAAACCTCACAAGTCTGATTTCAATGAGAAACTTTCAGTGATGTCCCAGTAAACTGAGCTCTCAAAAAAAAATTTTTTTTTTTAAATTATCATCCTGCAAAATTACTTAGCATATGTTTCCTTCCTTTAAGGGCGTGGAAAGGAAAGTGGAAATTAAGGAAACCCTTCCTGATGGTCTCTATGTGTGTGTGTGTGTATGTGTTAATCCCTCAGTCGTGTCCAACTCTTTGTGATGCAAGGATTGCAGTCCGCCAGGCTCCTCGGTCCATGAGATTTCCCAGGCAAGAACTGGAGTGGGTAGCCATTCCCTTTTGCAGGGCATCTTCCCAACCCAGGGATCGAACCCAGGTCTCCTGCATTGCAGGCAAATATTCTTTACCATCTGAGTCACCAGGGAAGCCCAACAGTCTCTATACAGTCTGTGAAACCATGAGTCAAGCTCCTCTGCTGAGAGTGAGGGTGTGGTGTTGAGATAGGGGGCCTAGGGAGAGGAGTGAAGGTTTTCGATAGCTGTTGGGGGAGGCAGGAATGAAAGGGTCACAGGTTAGTGGATAGCATGAAGGACCCAGGGACATGAAAAATATCAGTCAGTGAAAACACCAATCTGAGCAACTATGTGATTTCTATTCAGTTCCACTCTCTTCTGAGAATCTTTGTCTTTTAACTACTAGTTTAACCAAGTTTTACATTTTTAAACATTACTGATACAATTGGATTTCTTTCTGCTATCTTGATTTATACTTTCTATTAACAATCCTTTTGTTTCTTTTTTCTTTCTTGATTTTTCTTTATCCTCCTTTTTTGTCCATTGCTAGTTTTAAAGTTATTTACTGTTTATTTTATTGATTAATCTTAATTTTTCATCAATATATGAAAAATGTATTTCATTTCATATGTGACTTAACAATATATATATTGACTTAACACAGTCTGAAATTAAGCACTATATCTAGCCTCTTTCAAAACATGATAAGGATACTAGAAACTTTGATTATTCTTTTCCATCTTCCGTTATTGTTTTATAGCATTTCGCTTCTACCTTGCTTTCATCTGCTACTTCCAAACTGGTCATGTTTTTTATAGTCTTTGTTATTTAAATTGACTGTACATTTAAGAAATTCTTGCATCTCACTCACTTCTTTTGGGTTCAATTTTCTTCTAATCAAAGAAAATAATTACTTGTTCAAGGGCCTGTGGATAGTAAGTTTTCTTTGACATTGACTGCTTCTTCAAAGTAAAACCTCTGGTCTTTAATCAACTTTGGAAAATTCCTAACCATTATGGCTCAAACATTGCTTCTCCCCTGTTCTGTCTGTTCTCTACTTATTTCTGTTACATACATTTTGAATCTTTTTATTTTATCTGCCAGGTCTAAGAACTTCTTTTACATATTTTCTAACTTTCTTTCTCTCTGAGCTGCTTTTTAAACGGTTTCCTCATATTTATTTGTTAGTTTGCTTATTCTCTTTCAACTCAAGTTCATTATTTAACCAGTGTACTGAGTTTCCTATTTAAATAGCTGTATTCTTGTCTTTGGAAGTTCTATTTAGTTCTTTTTCAGATAATGTCTGTTCTTTTTTATAATGTTCTGATTTTATACGTTCTTTTATCTCTACTGCTTTTAAACAGAATTAGTTAATGAGGTAGGTAGGTAGTCACTCAGTCGTGTCCAACTCTTTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTGTCCATGAGATTCTCCAGGTAAGAGTACTGGCGGAGGTTACCATGTCCTTCTCTGGGGATCTTCCAGACCCAGGTATCGAACTCACATCTTCCACATTGCAGGCAGATTCTTTACCATCTGAGCCACTAGTGAAGCCCTAGTTAATCGTAGATCAATCATCTTCAGCTCTTGGGATGCTAATCCTTCTGCGAATTTTGAGAGGGCGTTCTTCTAATTATCCCGATAGGTAACACTTCCTCTTGAGCTTTGTAGTTGTTTATTGTGAGCTCATCTTCAGTAGGGTTTGTTTTTTCCTGTGGGCTTTGCATGAATTCTCAGCAGTTTCACTCTATCCTGGAGTATAAGGCAGGTTGTACTGAGGTTATATTTAATAGGATATTCTTACAGAATTCCTCTCTGATGTTTAGGTCTCTTTTTATTTTTACCTCTGATAAGAAATTTTCTGAAAATAGACCTTTCCATTGAAAGAGATCATCTCTGTGAATTTACATGTTCATAAAAGTAAGGAGCACAGAAAACTGTGGACGTCTGTGATGGTCCAGTGGCTAAGAATCTGCCTAGCAATGCAGGGGAAACAGGTTCCATCGTGGTCCTGGCGCCTGTACTCTGCAGCAAGAGAAGCCCCGCAGTGCGAAGTCCCCGAACCACAGCTAGACAGAAGCCTCCACTCGCCACAGCTAGAGAAAGCAGCTAAGACCCAGCGCAGCCAAGGATTAATTAACTAACTAATCAATTACGAACAGCTGTCTGTGTAACAAAGAAAACAGAAAATTCGATTATGCTGCTTTTACTGGAGTCCTACTGCCTGGCTTACTTTTCAAGTTAAATATACTGATGTGTGTGCATGTGTGTGGATGTGTGTGCACCTCCCACTTGTCCCCAGCTGGAGGGGCTGACACACTCACCTTTGAGGCACTAGGAGTGTGTCCTCTCTTCCTCACTCGAGCTCGGTTAGGGAAAATCACAGCAGCTTTCTGCCCTCCGTTGTTCCCCTCATCCGCATCCACCCACCCCACCCACAGGCACAAGGTGCTGTCCCAGAGCGGCCACACTGATTCTCAGGGAGCCCTGGCTGGTTCAAACAACGGACCGCTCTTGATTTTTCTAACAG
Seq C2 exon
GTGCAGGAGGCCAAGGTGACCGAGGTGAGAATCAACGAGGCTCGGGAGCACTACCGGCCGGCCGCCGCCCGGGCCTCTCTGCTCTACTTCATCATGAACGACCTCGGCAGGATCCACCCCATGTACCAGTTTTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development