HsaINT0050094 @ hg19
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11786903-11790282:+
Coord C1 exon
chr17:11786903-11787067
Coord A exon
chr17:11787068-11790141
Coord C2 exon
chr17:11790142-11790282
Length
3074 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCTGTTTATTTTTCCAACAGGTC
3' ss Score
10.76
Exon sequences
Seq C1 exon
TCCGATCTCACAAAGCAGCAGAATGGATTCAAAATTACCCTGAAAACGTTGGAAGACAGTCTTCTCTCTCGCCTCTCCTCCGCCTCTGGGAACTTCCTGGGAGAAACAGTGCTGGTGGAAAACCTAGAGATCACCAAGCAGACTGCTGCCGAAGTTGAGAAAAAG
Seq A exon
GTAAAACTCCTCTGGCTAGTCTGGGAAGGCAGCCTAGGCTGGGGTCCTCCTACAATTTTCTCTCCTCTTAGACAATGAGTCTGACTTTTAGAAAAATGTCAAAGTAACACATGGCTTTTCTGTCTTAGCAAGGTTCTTCTAGAAAGTCTACCTAGGCAGGACTCCTGAAGTGACTACCCCATATATCTTGTATTATGTAGTTCCCACCTTCTGGAAAATACTTTTGATGTCTTAACTCCATCCACAGTTGAGGAACACTTAAGCCTTTGTGGGGCCTGGTATTCTGTGCAGGGAATGGTAGCTCAAAATGGATACCTCAGATAGTGTGTGGAATTGCCCTGAAGCTAAGGAATCGCACTGCTGGAAAAGCCAACTGGTTTGGGCATGATTGCATCCTGACAAAACCCACCGGACCGCAGAATCTCACAAGTCTGATCTTAATGAGAAAACCTCAATAACTTCCTAGGAAACTCAGCTCTCAAAAACTGTATCATCCTGGGAAGTGATGACACAGTGCCCTACTGTGTGTAGCTTCCTTTATTTTATAATGTTTGGAAGGCCCTCGGTCCCCCCTGTGAGGACTAGAAGACGGGGTGTGATGGGAAAGGGGCCCAACCCCTGCTCTGTTCCAGCATACCACCAAACCTCCAACAAGGCCTTTTGCAGTCTCAGTCTCGCGCTTGCATCAGAAGGGCATTGGAGATATTGGCCCTGAGCAGGACAGAGCATATCTGTAACAGTGTCCAGGAACAATATACCTTTGACGGAAGATGCTTATTGCCAGATTATTGGGATTTCTCCAAATATGAAAGACTTCGTTCTAGGTAGAGACAAGGTAGGAAATATGAAAAGCAATGATGGGTAAGACAGATAAACCAGGTCATACCCACTCTGGGGTGAGGGACAGTTGAGGTTGGAGTGATGAGATTGAAAGGAGGAAGAGTCAGCCGAACATTGGGTCAACAGCAGGGATGTGACCACCAGGTTCCACTATCAGTTACCTATGGCCTCCGTATCTCTGGTTGGGGGCATGAGAGTTTGTAAAGTAATTACGGTAGAGCTGCCACTGCCCTGGATAAGAGAGCTGGGGAGACAGACCCAACTTACATCAAGAGAGTAGGTCAGAGGATGGGATGCAGCATACTGATCTCTTCTCCCCACCTCTTCATCTGTTTTTTTTTTATCTTTTTCTTTAAAATCAATGAACACTTATTGAGTACCTGCTGTGTGCCGAGGGTTGTATGAAGCTTTCTTTTTCCTTTTGTTGTTCAGTTTCTTTTTGTCTTCTCTCTCTTTCTCATTTATTCATCTCATGAACACTTACTTGAAGGCCACTGTATTCTAAGATCCATGATGAAAGTTGGAGATACAGCAAGAAATTTGCTATAATCCTAGGCTTTTAGGGCCTGGCCCTCTAAGGAAGAAAGACAAGTAAACAGGCAGTTACAAAACAGGGCTGAGGGCTGAGGCCAAGAAAGCACAGGGATCAGTGAACACACAAAGGAGGAACACTCAACCCACATTGGGTGAGAGGGAGGAGGTGCTTCCCTTGAGTGTAACTGGAACATAGAGGGGGTGGGAGCTGGAAGTGGTCACTGGCAATAAGGCATGAAAGGTGGCCTGAGTTTCCGTTGTATAGGGCTGTGTAAACCATGCTGGGAAAATTGGGCTACGTCCTGATGGGCATCAAAGATCATAAACCTCTTTCACATATTTTCCATCTCTGTTTCTTTCTGAGTTGCTTTTGTAACAATTTCCTGAGATTTCTCTTTTAGTTTGCTGATTTTCTTTTCAACTCCAGTCTATTATTTAAACTGAACACTTTTTAAATTTAAATAACTATACTCTTATTTTTAGAAGTTGTAGCTAGTTCTTTTCCAGATATGCCTGTTCTTTTTCATAATGTCCATATTTTATGCTTCCTTTTGTGTCCACTGCTCTAAAACATACTTTGTTAATGGTGAGTTTGTTCAGTCATTCTCAGTTCATGAGATGCTAATCCTTCTGGGTGTTTTTAGTTTAGTTTTGTTTTGTTTTGGAAAGGGGCCTTCTGATTGTTCCCTTTTGTAATACTCCTGCAGTTTGTAATTGTTTATTATGAGAACATCTTCAATAAGGATCATTGCCTTTTCCTGTGGTGCTCCCACAAATTATCAGTAACTTTCCTCTATTTTGGAGCATAAGGGCAGAGCATATTGAGGTTTGCTTTTAGAAGCATAGTCTAACAGAAATCTGTCTTCCTGATCCTGAGGTCTCCTTTCTTATTTTTACCTGTCATAAACAATTTTCTGGCTGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAATAACAAAAATTAGTCGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCATTGGACTCCAGCCTGGGGACAAGAGCGAGACTTTGTCTCAAACAAACAAACAAACAAACAAACAAAAAAGAAATTTTCTGAAAATAGAATATTCCATTGAAAGATATCTTTGTGAAATTACATATGAACTATTTCACAAAAATTAAGAAAAAAGAAGACTATACTATGTTTCTTTCCCTGGATTTCCACTGCTTGGCATTCTAGTTCATTTTTGAGTCATACTTTTTTTTTTTTTTTTTTGCATTTCCATGAAATCTTTCTCATTAGAGATGGAGTGTGGAGGCTTTCATGGCTCACGCTTCCCAACTGGAAGAGCTGACACCTCACCCTCCGAAAGCACTAGAAGTTTACCATCTCCTTTCTCATCCAAGTTCTAGGAAGGAATACCATAGTAGCTTTTCAACTTTCTACCCATCATCCCCATCCCTCTTCACTCCATCCCCTAAGCAGACGCATGTCTACTCACACAGAGGGGCCAAGTTGATTCTCAGGAAGCCCAGGTTGGTTGGAACAGTGGGCTGCTGTTTATTTTTCCAACAG
Seq C2 exon
GTCCAGGAGGCCAAGGTGACTGAAGTGAAAATCAACGAGGCCCGAGAGCACTACCGGCCAGCAGCTGCCAGGGCCTCACTGCTCTACTTCATCATGAACGACCTCAGCAAGATCCATCCAATGTACCAGTTTTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-DNAH9:NM_001372:56
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)