HsaINT0050094 @ hg38
Intron Retention
Gene
ENSG00000007174 | DNAH9
Description
dynein axonemal heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr17:11883586-11886965:+
Coord C1 exon
chr17:11883586-11883750
Coord A exon
chr17:11883751-11886824
Coord C2 exon
chr17:11886825-11886965
Length
3074 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GCTGTTTATTTTTCCAACAGGTC
3' ss Score
10.76
Exon sequences
Seq C1 exon
TCCGATCTCACAAAGCAGCAGAATGGATTCAAAATTACCCTGAAAACGTTGGAAGACAGTCTTCTCTCTCGCCTCTCCTCCGCCTCTGGGAACTTCCTGGGAGAAACAGTGCTGGTGGAAAACCTAGAGATCACCAAGCAGACTGCTGCCGAAGTTGAGAAAAAG
Seq A exon
GTAAAACTCCTCTGGCTAGTCTGGGAAGGCAGCCTAGGCTGGGGTCCTCCTACAATTTTCTCTCCTCTTAGACAATGAGTCTGACTTTTAGAAAAATGTCAAAGTAACACATGGCTTTTCTGTCTTAGCAAGGTTCTTCTAGAAAGTCTACCTAGGCAGGACTCCTGAAGTGACTACCCCATATATCTTGTATTATGTAGTTCCCACCTTCTGGAAAATACTTTTGATGTCTTAACTCCATCCACAGTTGAGGAACACTTAAGCCTTTGTGGGGCCTGGTATTCTGTGCAGGGAATGGTAGCTCAAAATGGATACCTCAGATAGTGTGTGGAATTGCCCTGAAGCTAAGGAATCGCACTGCTGGAAAAGCCAACTGGTTTGGGCATGATTGCATCCTGACAAAACCCACCGGACCGCAGAATCTCACAAGTCTGATCTTAATGAGAAAACCTCAATAACTTCCTAGGAAACTCAGCTCTCAAAAACTGTATCATCCTGGGAAGTGATGACACAGTGCCCTACTGTGTGTAGCTTCCTTTATTTTATAATGTTTGGAAGGCCCTCGGTCCCCCCTGTGAGGACTAGAAGACGGGGTGTGATGGGAAAGGGGCCCAACCCCTGCTCTGTTCCAGCATACCACCAAACCTCCAACAAGGCCTTTTGCAGTCTCAGTCTCGCGCTTGCATCAGAAGGGCATTGGAGATATTGGCCCTGAGCAGGACAGAGCATATCTGTAACAGTGTCCAGGAACAATATACCTTTGACGGAAGATGCTTATTGCCAGATTATTGGGATTTCTCCAAATATGAAAGACTTCGTTCTAGGTAGAGACAAGGTAGGAAATATGAAAAGCAATGATGGGTAAGACAGATAAACCAGGTCATACCCACTCTGGGGTGAGGGACAGTTGAGGTTGGAGTGATGAGATTGAAAGGAGGAAGAGTCAGCCGAACATTGGGTCAACAGCAGGGATGTGACCACCAGGTTCCACTATCAGTTACCTATGGCCTCCGTATCTCTGGTTGGGGGCATGAGAGTTTGTAAAGTAATTACGGTAGAGCTGCCACTGCCCTGGATAAGAGAGCTGGGGAGACAGACCCAACTTACATCAAGAGAGTAGGTCAGAGGATGGGATGCAGCATACTGATCTCTTCTCCCCACCTCTTCATCTGTTTTTTTTTTATCTTTTTCTTTAAAATCAATGAACACTTATTGAGTACCTGCTGTGTGCCGAGGGTTGTATGAAGCTTTCTTTTTCCTTTTGTTGTTCAGTTTCTTTTTGTCTTCTCTCTCTTTCTCATTTATTCATCTCATGAACACTTACTTGAAGGCCACTGTATTCTAAGATCCATGATGAAAGTTGGAGATACAGCAAGAAATTTGCTATAATCCTAGGCTTTTAGGGCCTGGCCCTCTAAGGAAGAAAGACAAGTAAACAGGCAGTTACAAAACAGGGCTGAGGGCTGAGGCCAAGAAAGCACAGGGATCAGTGAACACACAAAGGAGGAACACTCAACCCACATTGGGTGAGAGGGAGGAGGTGCTTCCCTTGAGTGTAACTGGAACATAGAGGGGGTGGGAGCTGGAAGTGGTCACTGGCAATAAGGCATGAAAGGTGGCCTGAGTTTCCGTTGTATAGGGCTGTGTAAACCATGCTGGGAAAATTGGGCTACGTCCTGATGGGCATCAAAGATCATAAACCTCTTTCACATATTTTCCATCTCTGTTTCTTTCTGAGTTGCTTTTGTAACAATTTCCTGAGATTTCTCTTTTAGTTTGCTGATTTTCTTTTCAACTCCAGTCTATTATTTAAACTGAACACTTTTTAAATTTAAATAACTATACTCTTATTTTTAGAAGTTGTAGCTAGTTCTTTTCCAGATATGCCTGTTCTTTTTCATAATGTCCATATTTTATGCTTCCTTTTGTGTCCACTGCTCTAAAACATACTTTGTTAATGGTGAGTTTGTTCAGTCATTCTCAGTTCATGAGATGCTAATCCTTCTGGGTGTTTTTAGTTTAGTTTTGTTTTGTTTTGGAAAGGGGCCTTCTGATTGTTCCCTTTTGTAATACTCCTGCAGTTTGTAATTGTTTATTATGAGAACATCTTCAATAAGGATCATTGCCTTTTCCTGTGGTGCTCCCACAAATTATCAGTAACTTTCCTCTATTTTGGAGCATAAGGGCAGAGCATATTGAGGTTTGCTTTTAGAAGCATAGTCTAACAGAAATCTGTCTTCCTGATCCTGAGGTCTCCTTTCTTATTTTTACCTGTCATAAACAATTTTCTGGCTGGGCGCGGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGGAGTTCGAGACTAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAATAACAAAAATTAGTCGGGCGTGGTGGCAGGCGCCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCAAGATCGTGCCATTGGACTCCAGCCTGGGGACAAGAGCGAGACTTTGTCTCAAACAAACAAACAAACAAACAAACAAAAAAGAAATTTTCTGAAAATAGAATATTCCATTGAAAGATATCTTTGTGAAATTACATATGAACTATTTCACAAAAATTAAGAAAAAAGAAGACTATACTATGTTTCTTTCCCTGGATTTCCACTGCTTGGCATTCTAGTTCATTTTTGAGTCATACTTTTTTTTTTTTTTTTTTGCATTTCCATGAAATCTTTCTCATTAGAGATGGAGTGTGGAGGCTTTCATGGCTCACGCTTCCCAACTGGAAGAGCTGACACCTCACCCTCCGAAAGCACTAGAAGTTTACCATCTCCTTTCTCATCCAAGTTCTAGGAAGGAATACCATAGTAGCTTTTCAACTTTCTACCCATCATCCCCATCCCTCTTCACTCCATCCCCTAAGCAGACGCATGTCTACTCACACAGAGGGGCCAAGTTGATTCTCAGGAAGCCCAGGTTGGTTGGAACAGTGGGCTGCTGTTTATTTTTCCAACAG
Seq C2 exon
GTCCAGGAGGCCAAGGTGACTGAAGTGAAAATCAACGAGGCCCGAGAGCACTACCGGCCAGCAGCTGCCAGGGCCTCACTGCTCTACTTCATCATGAACGACCTCAGCAAGATCCATCCAATGTACCAGTTTTCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174:ENST00000262442:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(22.8=94.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development