BtaINT0050839 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:30994211-30996611:+
Coord C1 exon
chr19:30994211-30994378
Coord A exon
chr19:30994379-30996494
Coord C2 exon
chr19:30996495-30996611
Length
2116 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGG
5' ss Score
4.2
3' ss Seq
TCCATTTGCTGTCTCTTCAGGAA
3' ss Score
9.82
Exon sequences
Seq C1 exon
GATCTTCTGAAGACAACTTCGGATTTCCACAAACTGGAAAAGCTTGAGTTCAGTGGTATCAGAGGAAGTGCCTTGAGCCAGCAGGCCCAGCAGATGTACACCGAATTTCAAGAGATGTACAGGGTCTTCTCAGACTCTTCCTACGACTGCTTGGATCTCCAGAGCGTG
Seq A exon
GTAGGGCTTGGAACGGCTACCTTGCAAGCTTTGTCTCTTTTTCAGATGCCTGCAGCCTCTAGCCTGGGTATTTACTTGCATTTCCCCTGTGCGTTTTCTTTGGCTCTGTGGTCCCCATGGTTTTATTGGCAGAGACCACAATTAATTATCTTTTGTGTCAGGAGAGAAGTCAGGGGAGGGAGTTTTCCAACTGCTGACTTCTTCGGAGTGAAGATACCCAGGGTTTCAGAGATGCTGAGATGGAGATGGGGTGATGGTGGAGGCTGCAGCCACTCTGCAGCTCCCAAAGCTTTAAGCTTTGAGCAGCACCTGCTGTGTGAAGGCCAGGCACACCCAGGCAGAATTTCATTAGTGGCCCGCAGAGGGGTAAGTGACGCAGTAGCCCAGTTTTCTGATCAGACTCTAGTTCCCTAGAGAGACCTCAGGATGAGGCAAGGGCCAACATTGCATTTTCCAGGATCAGGACACGGGAGTCCACATCCCACCTGTAGTGCAGGAGAGCTGAGACCAGTGAGTGCAAGACTGCAGGAACCAAAAAAAGCAAAAGGGTCGGTACAGAAACAGGGAATGGAGTTCCCGGGAAGGGAATGGCTGGATTACTGGAAAAGGAATTTTAGAGCATTTGAGGGAAAAGGAAAAAGCAATTAAACATCTGCTCTGAGCACCCTCCACTGTCTGCGTTCGTGCTCAGTCATCACTTGTGTCTGACTGTGGTCCCGTGCACTGTAGCCCACGAGGTTCCTCTGTCCTTGGAATTCTCCAGGCAAGAATAGTGGAGTGGGTTGCCGTTTTCTCCTCCAGTGGACCTTCCTGACCAAGGACGGAACCCGCATCTCCTGCATTGGCAGGTGGATTCTTTACCACTGAACCACCTGGGAGCCCCCTTCCATTGTCTAGGGGGATCTTAGCTGGCCAAACCCAGGAAATGGAACTTTCTAAAAGTTCCATTAGTTTAAAGTAGAAAAAAAGTTGGCTTACAAAGCAGGATCTATACTGTATGTTTTCTACCATGTGATAAAACAATACAAAACAAAATCCTGTACATAGAGAAGTGTGCTCCAATGTTAGTATGGTTGGGTTTGGGAAGTAGAGAAATACTACTGTGTTTTCCTACTTTTCTTTATCTTTTCATAAAAGTATGCATAGCTATTGTAAAGCAATAATAGATAATAATTTCACAAATTAGAGATGTTTCTCTGAAAATCAATGTTCTCTGAAAATTGCTACATTTGAAGAAAGAGCATGCTCTGTGTTGCTGAATAAAATACAGTTAATTGGGACAGGCTTATACTAAAAAAAAAAAAATTCTTTGTTGATCTGAAATTTAAATTTAACGGGCATCCTGTAATTTTATTTGCTAAATTTGGCAACCGTGGGGACAATGGCTAGCTGCTGTCTTAAGCAATTAAGTGTAGTTAGAAGAAATAGTGTATAGTTGTTAAATTAGCTTACTTTTCTCCTAATAGCCATATCAATTTGTTTACACTGAAAAGAACAGGATTTTCACTTGAGGGAGGAAGGGAAGTCGGGGGTAGTGATGAAGTAGCCCCATTGTTGGGGCTGTTGCTGCCAAGGTGGCTTTCAGGGTGGCCTGAGCTGGTGCCGCAGGTGAGAGAGAAGGGGCTGCAGGAGCTGGAAGTGGGGACACAGAAGAGAGGGACAGGGGGCCAGCCTCACCTCCGACTCTTTACCATTTTGCCTCGAGTGACTCAGACAGTAAAGAATCCACCTGCAATGCAGGAGATGTGGGTTCGATTGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGGAATGGCTAACCCGCTCTGGTATTCTTTCCTGGAGAATTCCATGAACAGAGGAGCCTGGAAGACTACAGTCCATGGGGGTCACAAAGGGTCGGACACAACTGAGTGACTAGCACATGCTAATACTAGAGAATCTAGGAGAAAAATGCTTAAATAATAGGGCAGCTATTAAATATCCCTATTTAATAGGGATAAACACTGAGGCACACCATAGTGAACTATAGAAAATCAAAATATATCCTTGGTGTGACAGATTAATAGGAAAAAGCATTCCGGGATTGTCCTTCAGAAAATCATGTTTTCTTATGTCCATTTGCTGTCTCTTCAG
Seq C2 exon
GAATTTGAAAATGACATCTCTGACTTTAATCAGAGAGTAGAAGACCTTGACAGGAGGCTGGGGACTGTCTTTATTCAGGCCTTCGATGACGCCCCTGGCTTGGAGCATGCCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(9.4=100)
A:
NA
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development