Special

MmuINT0051267 @ mm9

Intron Retention

Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65944066-65947218:-
Coord C1 exon
chr11:65947051-65947218
Coord A exon
chr11:65944183-65947050
Coord C2 exon
chr11:65944066-65944182
Length
2868 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
TCCATGCGATGTCTCCTCAGGAA
3' ss Score
8.65
Exon sequences
Seq C1 exon
GATCTTCTGAAGACAGCCTTGGATCTCAACAATCTGGAAAAGCTTGAGTTCAGTGGCCTCAGAGGAAACTCCCTGAGTCAGAAAGTCCAACGCATGCATGAGGAATTTGAGGAGATGTACAAGGTCTTCTTGGACTGCTCCTATGACTGTTTGGACCCCAAGGGCACG
Seq A exon
GTAGGATTTGGAGGGGCTAAATCACAAATCTGGATCCTTCTTCAGCTGCCTCTAGCTGCAGCCCTCAAACATTTAAAAGCTTTGTTGTTTTTCTTAAGAAGCCCATATGGCTCTGTGGTCCTAGTGGCTCTGCTATTTTTTATTGTTGTCAGGAGAAATTGTTGTTTCTGTGTCATTAGAAAGATCCTAATTATTCTATATACAGGTAGATAAATCAGAAGGACCCAGCCATTGACTGTTCTAAACTAATGCTATCTATGGTTATTGGCAAAGGAAGTAGTGGCTACTTTAAGGTTTCAAAGGTTTAAACTGAGCAAAGTAGACTATTTGCAAAGGTACTTTGTAACCTCACTTAAAGCTGGGATCTAAGATAGTCAAATTGTCAGGTATGCAGAGCTAACTAGAATAGACCTTACCATTGGAGAAGTGAGAGGGAAATGGGAGGAGTTGGTCAATGAGAACAAAGTGTTTCTTGATGTAGGGTGAGTGGTTTCTACAGGTGTAATGTACAATGTGGTGATCATAGTTAATAACACTATATTGTGCATCTGAAGTCTGTTGATGGGATAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACAACTTTTAGTTATATGAGGTGATAAGTTATCATAGATTTTAAATAAAAACTCATGTTAAGCCTACCACTCATGGTAAGTCCATTGTGTTGATCATTCCACAGTGTTGTACAGGTATCAAAACATCACTGTAAAGCTTAAACACATGGTTTTACCAATTATATTCAATAAGGCTGCAAAGAAACTCCAAGCTTCAAGAACAGACTGCCGAACAGAGACCAAGCATATTGATAGAATTTTATTGGTGGTTCAGGATTAGATAGAGGAAGACCATTCAAGATAAGCAAAGATAAGGAAGAACTTTCTAAAGATGGGGCACAGAGTCCAGGCTTCACCTATGTTCCCCCAAAGTCAAGTGCCAGAGGAAAAGAAAGAACTTGATATGATGGGGAAAGGGAATCCCTCCCCCCAAAAAGGGCAGGATTACATAAGAAGAAATTATAATCTAGGAGGAAAAGCAGAAATTAGGGCAGGAGTTCATTATTAGCACATTCAGCCTCTAGGGATCGTTATTGGCCAGATCCAGGGGGACAGGACTTAATCAAAGTCTATTAGCTGGAAGTATAAAAGAAAGAAGAAGATAGATTACAAAAGAGAATGTATATGTATATATATATATATATATATATATATATATATATATATATATATATATGATGGGTTTACAACTGTATAAAATCTCATATACCCTATTTATTATATATCTATTTATATTCACATATATAATATATACATATATTATATACACACACATATATACATTGATATATTCCATATATATGTGTGTATACACACATGGAATACATATATGAAAGCATGTCATAATACCACAATGCCAATATAGCTTTAAAAAAAGGTATAAATGTTCTATATTTTCCTACTTTTCTTTGTTTTTTTTTTAAAGATACAAACACGGGGGCTGAAGTGATGGTTGTTACACAAAACCTGAGTTCAGTTCCCAGTGCCCACACTGGGCAGTTTACCACCTCTTGGAACTTCCATTCCAAGATCTGACACCTTCTTCTGGCCTTTGCATGTGCCTGCATTCACATGCACACCACACAGACAGTTTCTCATACATAAATAAAAAGAGCTAAATCTCTAAAATATAAAGTAAGATCACGCATTACTCCTGTAAAACAACAATAATAACAAATAGTATTTGTATAAATTAGAGCATTGAGCCATCAAAGTTTTCTTGAAATCTGCTACATCCTAAGAGGTGAGGCATGCTTAGGTTTGCCAGATAAAGAACAATAATTAAGAGACACTTGTATTTTCTAAAATATAACTGTTTGTCTGCAGCTCGGATTTAACTGTGTACCCTGTGTTTTTATTTGCTAAATTAAGAAACTTAAGAACAATGGCTAATTGCCGTCTTAGCCAATTAAGGTGTATTTGGAAGGAATAGTATTATTTTAATTAGTTTGCTTTCCTTCTAAAGACTACATTAATTTGGAGACTCTGGCAAAGAGCTGCATTTCGAATTGGGGGAGGAAGAGAAGATGTTGACCCTGGGGCTGCTGCTGCTTCAATAATCTGTAGGGTAATATGAGCTGACACTGGGCAGAATAGAAAGGGGCTCAGAAATGGAGAGAAAGGAGCACAGTAAGTAAGGTTGGTAGATGCCAGCTTTATGTTTCATTCAACTGTACCATTGTGGCCAGAGCATCATGCTCCCAGGGTGTTCTAGTTAGGTTCTGTCAACTTGACAAGCATACCTAGACATTCATTCCTAGGAAGAAGAAAACTCAGTTGGAGAATTGCCTCCATTACACTGGCCTCTGAACAGGTCTCTGGGGGCATTTTCTTGATTGGGTGGTGCAGGAGGGCCCAGCCCACTGTGGGCACTACCAGCCCTAAGCAAGAAGGTCTTGTCTGTATTATACAGCTAAGCAAGCCAAAAAAAACCAAGCCAATACACTGCTTTCCTTCATGGCTTCTCCCTCAGTCTCTGCCTCCAGGTTTCTGCTTGAAGTTCCTGCTCCAATTTCCTTTCATGATGGACTGTCATGTGGATGTGTAAATCAAATAAACCCTCTCTTCCCCAAGTTGGTTTTGTTCAGTGTTTTATCACAGCAACAAAGGAGCAAACTAGGACATGCAGTGACGTTTAGTGAATTAAATAAATCTTTGGTATAACTGATTTCAGCACAAAGGTTAGCAGTCAAGGCTCTGCTGAGATTGGGTTGCAGAAAAACAAGGTTTTCTTACGTCCATGCGATGTCTCCTCAG
Seq C2 exon
GAATTTGAAAATGATGTCTGTGAGTTTAACAAAAGAGTGGAAGATCTTGACCGGAGACTGGGGACTATCTTAATTCAAGCTTTTGATGATGCACCTGATGTGGAACATGCCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
No protein impact description available





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF083857=DHC_N1=FE(12.3=100)

							
A:
NA

							
C2:
PF083857=DHC_N1=FE(6.5=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000079494





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000104331
  



Associated events






Conservation


Human
(hg38)
chr17:11629585-11632586 
ALTERNATIVE
HsaINT0050108
(DNAH9)
Human
(hg19)
chr17:11532902-11535903 
ALTERNATIVE
HsaINT0050108
(DNAH9)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr19:30994379-30996494 
LOW PSI
BtaINT0050839
(DNAH9)
Chicken
(galGal4)
chr18:1040521-1042289 
LOW PSI
GgaINT0127337
([1])
Chicken
(galGal3)
chr18:1022448-1024216 
LOW PSI
GgaINT0127337
(DNAH9)
Zebrafish
(danRer10)
chr12:190177-191194 
ALTERNATIVE
DreINT0058287
(dnah9)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]










Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"