GgaINT0127337 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GG21]
Coordinates
chr18:1040353-1042406:+
Coord C1 exon
chr18:1040353-1040520
Coord A exon
chr18:1040521-1042289
Coord C2 exon
chr18:1042290-1042406
Length
1769 bp
Sequences
Splice sites
5' ss Seq
GCGGTAGGT
5' ss Score
9
3' ss Seq
GCTGTTTTGCCTTCCTACAGGAT
3' ss Score
11.33
Exon sequences
Seq C1 exon
GATCTCCTGGCAAACGCCTTGGATCTGATGAAGCTGGAGAAGATTGAGTTCAGTGGATTTAAAGGGAAGGCCCTGAGTCAGCAGGTCCTGGACATGCATGAGGAATTCCAGGAGGCATACAAGGTCTTTGCAGAGCGAACCTATGACTGCCTCGACCTGACCAATGCG
Seq A exon
GTAGGTGGGACTGGCCTCTGGGAACTGCAACACCACGTGCTTGTTTCCAAAGCAGTGACGAAGAACTGGCCCACACGCACTCCTACTGACTCCTTCCCACCTCTTCCCTCCTTTTGTTACGATCTTATCTCTCACTCTGGGGAAAACACTCACTGGGAGCACTGGTCCTGCAGACATACGGGAGCTCTTGCAGGCCCATACCTGGCATGTCCTGCCAGTTCAGGACCTTAGACCAGTGCAGCTGGGATGCCTGGATTTCTGTGCATTTTGCACAAGGTTTTACAGTATGTGGTGCTTGCTGGGGTGTGTGAACTGTACCAACATCCACATTATTTTGTTTCCCAGCTCTCAGTTCCTAGATTGCCTGATGAAGGCCAGCTCAGGTAATCTCAGGGGATGTCTTTGCTCGTCTTGCTGCTCACATGATGTCTGGTGCTCTTGGCATTCAAGGATTCTGTGTTTAAATAGTCATAGTGCTTTAATTAAAGGATCATTCCCAAACCTCTGAGTCATGGCTCAGTGAGCATCCAAATCCCAGGTGCTCACAGCAGCACGTCACACAAGTAGGGCACAGCAAGTGAGCCACTGTACTTGTGGTCTGCATGGAAACTCAAACTCCAGGCTTTGACACCAAGCAGCGTGGCCTGTGCAGGCTGTGAAGGAAGGGTGGGAATGGAATTTCTCAAGGGATCTGTGTCAGGATCTCAGCAGGAGAAATCAGAGATCCTCTGCTTGTCCCGTTTGCTAAATCGAGTTGTCAGGACATGGTTAGGCTGCTACGTGCTTCCAGAGGAGGGAGTGCTAAAACAAGTGGCCACAGGATAGCTCAGTGCTGAGGAGCTCCAGTCCCACACTGCTCATGGGACAGCCCTTCATGGTGGTCATCCAGTTGGAAGGAAAAGGCAAAATCCTTCTTCCTGTCTTGCTCTGGGTTGTGCTGGGATGATGGGCGAGTGGGCTGGTGGTGGGATGCAAGGCTGGTGTGTCCTTCCTGTGGGTGATAGGGTCTATATGGCACAATGAGGGCAGCTTGCACTTCACCCCCTGTAGTTCCCAGTGATGTCTTTGCAGTGGGAAGCACAAACCCCACTGCTGCCTGGGAAGGTCTTACTTGAAAACTGCTTGCTCCACATCACTCCTTGTTCAGGATAGAGGACGCAGAGGGAGTGATGACAGTGGTTCCGCAGGGGCTGGCTTGGCTTTCGTGACCCTTTGGCCTCTTGAGTCACACTCATTCTTTCAGTGCTTGAGTTTTCCACCCTCTGTTACTGTGTAGAGACTTTTTTTTTAGCTAAATCATCTGGTCTTGCTGAAGCAAGTGGTGGCACTGAACTGCCGGTGGCGGCAGTAGTAAAGCTGTTGCCTTGCACTTTGTCTTTCCAGGTAAGAGACACACAGCCTGATTTTTATGTGCTTTATCCAGATTAGAAAGGCTGAAGCCTTGCAGTTTGTCAAGTCCAACCTTTAATTTTACTTGTAGGAAAAATAAAACAAGATTTTACTCTTCAACTTCAAAGAGTTTATTACCTTTAATCAGGGCAAGGGAAGCAGTGCCAGAAGACAATGGAAGTTACAGAAATGAACTGTTGAGGTTTGAAAGGAGCTCTGGAGATCACATAGTCCAACCCCCTGCTCAAAGTAGGGTCAGCTAGAGCAGTTAGGTCTCCAGTTAGGTTTGGTATCTCCAAGGGTGGAGACCCCACAAGACTCTCTGAGTATCCTCAGTGCTGTTTCACAGCCTCATGGCTTGCTGTTTTGCCTTCCTACAG
Seq C2 exon
GATTTTGAGCAAGATGCCTTTGATTTCCAGCAGAAAGTAGAAGACATTGACCGGCGCCTGGGGACTGTTTTCATCCAGGCCTTTGATGATGCCTCGGACTTGGATCACACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026090:ENSGALT00000043114:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(17.2=100)
A:
NA
C2:
PF083857=DHC_N1=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAACGCCTTGGATCTGAT
R:
AGGTGTGATCCAAGTCCGAGG
Band lengths:
272-2041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]