BtaINT0050845 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31226581-31228920:+
Coord C1 exon
chr19:31226581-31226808
Coord A exon
chr19:31226809-31228728
Coord C2 exon
chr19:31228729-31228920
Length
1920 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TGGGCATCATCTCCTTCCAGGAC
3' ss Score
7.84
Exon sequences
Seq C1 exon
AATATCCACCTGGTGGCCAAGTGGCTTGGCGCCCTGGAGAAGAAGCTGGAGGAGCATAGTGAGAACAGCCACGCAGAGTTCAGGGTCTTCATGAGCGCGGAGCCCGCACCCTCCCCTGGGAGCCACATCATCCCCCAAGGCCTCCTGGAAAATGCCATCAAGATCACCAGCGAGCCACCCACGGGCATGCACGCCAACCTGCACAAGGCCCTGGACAACTTCACTCAG
Seq A exon
GTAGGGCCCTGGAGGGAGGGGAGCAGGACACCTCGCCTCGCAAAGAGCAGACCCCCCACCCCCACCCCGGGCAGGAGGAAAACACACTCTCTTGCAGGAGTCAGTGGCAGGGCATGCCCTGCTCGCCTGCCCTGAGGGTCCTGAGCAGAGACAGGGAAGGGGCGGCAGCTGCTTCAGTGGTATAGCTCCTAATTATTAAGATAATAGAACTATGCCTCGGTAGGTTTAGTATCATCTTGTCAGCCTCCCCAGGGGCCCTTGTCTTTGGGCTTACACCATGCAAGCTCAACATCCAGTCTTAGTTATCGAGCAGTTGGGAAGTATATCTCAAGAGATGCTGGCTTGTCCTGGTTCTGCTGTGGAAGGATACACAACAGTTGACATTTGGGACTTTACCAGCCTCTGCAGTAGGTCATTTGGAGGAACAGGGACAGATTCAGGAGTCTCTTCATTGCTCACAAGAGTGTCAGTTGCTCCATTCTGCATTTGCAAATGCTTGGAAACAGTGGCCCGCTTAATACCCTCTAGGATTTGCTTTGTTCCTCCAGAGCCTTATTTTCACTGTTTATGGGACAAATCACAGAACTGGGGTCTTTTCATTCCCTCTTCCCTGACCACTGTGCTGTTTGGAGATGATCATTTCATTCTGACTTTCATTTGAGCGAACCCGCTGTCAACTAGCTTCACAAGTGTGGCTTCTCATCTTTGTGCTTAAAGGCATTTTTTCAGCAGGACTCGATTTTCCACGTGTGTCAGAGGTAACAAAGGAAGCTCCTTACACGTCCGCAGAGAATAGCTCTGTCCAAAAAATCATTATTATAATAAGTTCCTGTTTGCACAAGGCAGTGACTTTGTTTCCTGTACCATCTCTGACCTTTCACATCCATATCTTCATGGCAAGCGTGTGCCCAATCAAGGGACCAGAGAGAGAAACTGTGTCACGGGTTCACTGGGGAAAAAATCAGACCTACCAGCAGCTTAATCTCTGCGGTCTCCTCTGCTTCCCTTCATTGCTGTAAGCAAAGTCTAAGGTCCACCTCCTAGAAGAAATGCCAGGACTGACTGAACCCAATCTAGTTGTGTGAGCTTTGTAAGTGCCTCTCGGGCTCTAGCAGCAGCATCTTGCTCCTTCCTAACAGAGGAGCTCACTCAGAGGACACATTTCCTTCCAAAGAATCCAGGGTTCGCGTCCTAACAGCCGTTCACAATGCAAGTTTCTCCCTCCCCACTCATCCCCATGCCCATTAACATCTAAGAACAGTTCCACCGACTTCCTCTGGATTCTCTCTTGCTTTTCTTCCATCTTCCCATCTTTCATCCTCTCTTCATGAGTCAGACCATTTCCCCTGCCTTCTGCGCTGCAGCCAGGCCCCTCGGGGGTCTTGCATCTGCAGCCACGTGTCTGTTAGGATGTAAAGGGCAGGGCACCCCTCTGTGTCTTGTGGCTCCAATTCCCACCGCCCTCTGCTTCAGCAGTTCCCGCAGCAGATGAGCCGTGGGGTCGTCAGTCACACAGGCAGTAATTACACCTACTGAGACTCCATGATGGTCAAGGAAACATGACAGGAAGGAGGGGAGTCAGAGATGATGCTGTGGGTGTCCCCACCCACATCCCAGTGCTGAGTGCTGTCAACAGGACAAATGTAACACTTCTGTGGCCCCCTACCCTTTTCTCTGTTGGCTACACTTGGGAACGTCATTAGCATGTCCGTGTGTGCAAACTGCAACTGTAAACAAGCTCTGTTATAGGCTGAATCTAAACTAAAGCCCAGCCCCTTGGCAAGGTCCTCTCAAACCTGACTCCATGCCTGTCTGCAGCGCAACCCACTGTCCTGCTGCCACCCAAGTCTCCGCACCCCCGCGCTGCCTGCCTCGCGTCACAGCTGCTCTGCTCTGACGCTGGGCATCATCTCCTTCCAG
Seq C2 exon
GACACCCTGGAGATGTGTTCCCGGGAGACGGAGTTTAAGAGCATCCTCTTTGCGCTTTGTTACTTTCACGCTGTGGTGGCAGAAAGACGGAAGTTTGGGCCCCAGGGGTGGAATCGCTCCTACCCCTTCAACACCGGGGACCTCACCATCTCTGTGAACGTACTCTACAACTTCCTGGAGGCCAACCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:75
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.066 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGAAGAAGCTGGAGGA
R:
TCACAGAGATGGTGAGGTCCC
Band lengths:
353-2273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development