GgaINT0127396 @ galGal3
Intron Retention
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1171436-1175232:+
Coord C1 exon
chr18:1171436-1171663
Coord A exon
chr18:1171664-1175040
Coord C2 exon
chr18:1175041-1175232
Length
3377 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
CCTCCCTGCCTGTGTTGCAGGAT
3' ss Score
10.96
Exon sequences
Seq C1 exon
AACATCCATCTGGTGGCCAAGTGGCTGAGCTCTCTGGAGAAGAAGCTGGAGCAGCACAGTGAGGGCAGCCATCGGGATTTCCGTGTCTTCATTAGCGCAGAGCCAGCTCCGTGCCCAGAGAGCCACATCATTCCGCAGGGCATCCTGGAGAGCTCCATCAAAATCACCAACGAGCCACCGACCGGGATGCACGCCAACTTGCACAAAGCCCTCGACAACTTCAACCAG
Seq A exon
GTAGGGGCCGTCCTGCTGGGCAGGCTGGGGGCTTGGTGGGTGCTGGGGTCATGCAGTGGGACGTGGGGGGACCTCGCCAAGCCCTTCTCATCACAGTGTCCGCAGACCCCTCAAGCCCTCCTCTGCTCTCCGGATCTCTTTCCATTTTCCAATGGAGGACTTGGGCGATCCTGGCCAGCCTTCTTCTTGCAGGAGGTCACAGCATGTTGGATTTCAGCCCAGTTTGTGCATTTGTCATTCATGTATGATTCTTAAAAAGGGTGTTTTGTTACAGAATCAAAGTTGGCTCCACAGGGAGGCAGTTGAGTCACCATCCCTGGATGTGTTTAAAAACCGTTTGGATGTGGTGCTCAGGGACATGATTGAGCCGTGGGTCATTAGAGTTAGGGTAGTATGGTTAGGTTGTGGTTGGACTTCATGATCTTGAAGGTCTTTTCCAACCTGAGCAATTCTGTGATTCTATTCTATGATTCTGCAGCATTTGGGAAACACTTCTGTCGTGATTTGACTTGATTTCTGTGGTGGTGTCCCTCCATTTTGGGTTGGTGACTGGCATGTCACGTCTGTCACCTGGAGACACAGAGAGGAGAGCAGCCTGAACTTCACCTTCTACGGTGATCATAGTTAATTTCTGCTGGGGCTGGTGGCAGGCTGCTAGTTCCTTTAATTGCATGCAGCTCGTGGTTATCACACAGCCACACTCCTGCTATCCCTGCTCTTTGCTGCAGGGGTGCAGCAGAATCCTGTGCAGGGGGCACGAAAACGGAGTGTGTGGCAGTGATGGGCAAATATTCTTCTTCTCTTGGTGACTGCAGGGGGCAGGGCTCAGTGCATGCAGTGAGACACAACAAACTGTGCAGGAGCAGCATAGTGGTTCCCGGAGCAGCCTGGGCTTCCAGGTGGTGCTGGAGCTGTCATGCATCACTGCTGCACTTCTGCCCAGCCCATTTTCTGCATGACCCCAAAGGCTAAGGGCTAACTGCTCGCGTTTATGATGATTCCTTTTCGAAAGACATGGACCATTGCACTCTGCTGCCCCAAATGCCCATTACCTTCACTCACACATGCTGCCTTGGGCATGCAGCTCTCCCAGCAGCACCCTGCCTGCTAACCACAGCATCCAGCAGGGCCTGCAGGAGCTCCCACCGCTCTGCCTGCCTCCTTGTGGCACTGCAATCACTACGGCCTCTCCGTTCTGCTGATGGCTGCATCAGGAGCACACAGGGCACATCTTTCTCTCCATGTCACTCGGGATCAGGCAGGAGCATCCCCAGCCAGCGCTGGACCCATGGCACTGCTCCATGTGGCAAAGAAATGATATGAGGGGGGTCTCAAGTGTAGGAGCTGCTCTCCAAAGAGATGAGAGTGGGAGCCACAGCACAAGGATTAATGCCAGCAGTCGGAGAAGATTATTCCATTTTTATCTACTGTCATTCATACTGTCATTTATCGTCCTGAACTCCATGAAACGTCCTGGAGAATGAGGGAGGGGAGAGCCTTCATCCAAAGTAACGTTTTCATCCTGCCCATGCTCGTTTCAATCAGATAGTAATTAGCGTTTTCTAAATTGCCGGAGTATTATAAAATGTCTCTTATCACAAATCCTGGAGTGAGTGGGTGGAGCCCCTTTACACCTCATTTCTTTGCTTTGTACAGAATACATGTTCAAATTTAGCTTTTAGCTGAAAGCCACTGAGAAGGGCCATTATTGTGCGTGGGGGAATATCGTTCTGATCTGTGGCTGAAATAAAAATGCACAGCCAAATAGAGAGGCCAATGAGCCTGCAAAGGTCTCATACTCAGTTTTCATTCCGAGAAGCTCTCTTTGAAGTCCAGGGGTATTTTCTGAAATGAAAAACCTGTTCTTCATCAGGTTAATGATAGTGGAGGGAGCTCAGAGTCCGGTCTCATCAAGGGGAAAACAGGAATTGAGCTGTTCTGAGTCCTCCTATGCAGTTAGTCAACATCTTGTACACTTTGCAGCAACTGGTTCCCCCTGTTCAGCAGAGACCCTGAGCTCTGCAGCTGGTGAGAGGTCTAACAAAGTGCATTATTTTAGGTGAAGATGATAGAGAAAAGTCCACACAGGTGCCCTCTGTGGTGCTTACTGCATAACAGAGTTGGACTAAAGGGTCTGTCCTTGGCAGGGAGGATGCTCTCTGCTCACTCAGGTCTATGCCTCAGTGCACGTCAGGGCCACGGCACACTGAACACACTGCTCCTGGGGAGGGTTTGCAGAGACCTGGATGGAAGTGTGGGTCTGTCCTTCCCAACACATCCATCTCCTGGTTCTGGGGAGATCTGTGCTGCTACAGGCATGTGGGGCATGCTGTCACTCTCCTGTCACAGGAAAGGGGATCTGTTGCTCAAGCCAATGCAGAGCAGGGGCAGGAGCAGTGGAAGCATCCACCAAGCTTCAGCCACAGAATGAGGTCTCAGACCCATCCATGAGAACAGAACTTTGGCCCAGGTGCTGTGCATTCACCTCCAGACCCTTGTTCTTTGGCTCTGCTATCCCATAGAAGCGATTTCCACATACCAGGACCAGGCATGGCTGCCCAGGCTGCCCCTGTCCTGCCTGCTGATTTGATCACACACTACTTCCCTCTGGGCTCTTTGGGGTCTGGTTCCTTCATGCACTGTCAATGATGAAATGACTCAGGCTCCTGCCCTTACACCATGAGAGCTCTTCCTACTGCTTTGTCAGTATTCCAGCTTTAAGCATAGCCTAGAAATCTGGCAAGGAAGCACCAGTTGCTGTGCTGACCTTGTGGGTGCTTGTTTTTTGTTTTTCTTTGCAAGCATTTTGTCCTCTCTGCTTAGATTTTTGGAAGTCTTTCCTGCCTCTGCCTTGGTGTGCTATCAGCACATGTGCTGCTACAGTACATGGCTGGGCTGGGTTTGTGCAGAGCATCAAGCACTGCTGTCCTGCAAGAGTTCTCTGTTGCTTCAGTCCTGTGGCTTAGAAAAACACTGCTCCAAGAAACCTTATGTATGCAAGAGGCAGAATGGAGTGTACTCCTTCATCCTCCTGGGCATGAGGTGTCACAGGGCTGTCACCCCATCTGCAGTGGCTCTCCAACTCCCTGATGTGGGATGTGGGGCACACCCTGGCGCTGGAAGGGTGCAGCTTTCCTTCTCATCCTGGCTCTTAGACTACAATGTCTCTTTGATTTGTGAAGGAAAACATGAATTCAGAAAGTATGCAATGGAATTTACCAGCAAATCTGTGATGAAACCCACTGTCTCAGAGAACTGGAAGGCATGTAGGTTATGCAGAAATGAACTCGTGGAGTAAATCAGTTCGCAGCTGTCTGAAATCCGGTGTACTTGGGAGGCATTGTGGACTTACCTCTGCCTCCCTGCCTGTGTTGCAG
Seq C2 exon
GATACCCTGGAGATGTGCACTCGGGAGAACGAGTTCAAGAGCATCCTGTTTGCCCTCTGCTATTTCCATGCTGTGGTGGCAGAAAGGCGCAAGTTTGGTCCCCAGGGCTGGAACCGATCCTACCCCTTCAACACTGGAGACCTCACTATCTCTGTTAACGTGCTCTATAACTACCTAGAGGCCAGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111:ENSGALT00000039398:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.6=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]