BtaINT0050849 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31236733-31245747:+
Coord C1 exon
chr19:31236733-31236915
Coord A exon
chr19:31236916-31245357
Coord C2 exon
chr19:31245358-31245747
Length
8442 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTCTGGCTGTTTGTCTTCAGGGA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTCAAGGCGGTCCTGGAGGAAATACTGGAGCGGGTGACAGATGAGTTTAACCTCCCAGAGCTGATGGCCAGGGCGGAGGAGCGCACCCCCTACGTGGCCGTGATGCTCCAGGAGTGCGAGCGGATGAACGTGCTCACCAGACAGATGCAGCGCTCCTTGCGGGAGCTGGACCTTGGACTAAAG
Seq A exon
GTGGGTGAAGCCAGGCTGGGGACGGGGCTCTGGGGAGCTGGAGCACAGCAGTCACAGCAGCCTCACCACCCAGGAAGGTGCCCCTCCTAGAAACGGAGTGTGGCCCTTCCACAGGGGTGGGTGAGACAGGCTCCGGAGCCGGAAACTGGGCAGGTGGACTGAGCTGTGACTGGCAAGCTGCCCAGAGCCCACACGCTCTGAGCTCCAGGCAGAAGAGAAATCGACACCCAGTGTCTTCTGCTGACGTGGCTGGCATTGCTTTCCCAGGAGGTAGAAGTGTGTGTGCTGCTGCATCGAAACACAGGGTCCAGACACCCCGGACCACCTCCCCGCTCTACTGCATCCTCAGCGTGTGACTTCAGAGTGACTTAAGCCTCACCCCGTCCCAGTTCCTTTACCTGTAAAACAGGGCGAGTGGTCCTGCCTCGGGGGGCTTTGGGAAGGACTCAATAAATCTATTTGCATGGGTTTCCCAGTGGGTCAGTGGTAAGGAATCTACCTGCCAATGCAGGAGATGCGGATTCCATCCCTGGGTAGGCAGATCCCCTGGAGGAGGGCATGGCAACCCAGTCCAGTATTCTCGCCTGGAGAATGCCCATGGACAGAGGAGCCTGGCGGGCTATAGTCCATGGAGTTGGTTGCAAAGAGTCAAACACGACGGAGTGACTAAATGATAACAACGTAGAATGTTGTAGAACAATGCCTTCATGTGGCAAGCACCCAGAAGTGTAAGTACACACAAATGAGTTCCATTCCAAGAGCGCATTAAAAGTCCACTTGGCTCAGAAACCCAACAAAGTTAGCCTAGGTACCCAACTAACACAAACGGCTATATAGCACTGTACTGTAATAGGTTTATAATACTTTTCACACCAATAATGCATAAAAACAAACACAAAAAACAAAACAATCTTACATCACAATACCTTGAAAAGTACAGTTGTCCAGCACAACAGCTGGCACACAGGGCTGGTATCAAGTGAACAGGCAGGAAAAGTTACTGATGAAGGAGGGAGAGGAGGAAGGAGATGGTAGAGCTGAAGGGTTGTCAGCAATAGGCGACGGAGGGCAAGCTGTAATGTCACTCATGCCTGACGTGATAGATGCCTGACACTGGCATCTTTGAAAGTTCACAATTTGAAGGTTCGTATGTAGGGGACTTACTGTATTATTACTGCCCCATCAGGGGAGGTCCTTCATTGGAAGGACTGATGCTGAAGCTGAAGCCCAAATACTTTGGCCACCTGATGTGAAGAGCCGACTCATAGGAAAAGACCCTGATACTGGGAAAAATTGAGGGCAGGAGGAGAAGGGGGCAACAGGAGTAGATGGTTGAATGGCGTTGCCAACTCAATGGACATGAGTTTGAGCAAACTCTGGGAGATAGTGAAGGACAGGGAAACTTGGCTTGCTGCAGTCCACAGGGCCGCAAGGGGTCAGACGTGACTTAGCAACTGAACAACAACAGTGATCAGAGGAAAGGAAAGAATTTTAATCTTTTGCAACCTCATGGTTATGTGAAGCATCCAGGATGCTACCCGAGCTCTGAGCAATGAGAGAATCCCTTATTTATACCACCAGTTATTAAGCACATCTACTTCATTCACCATCAGAAAATTCCATCAAGTGCCCAGCACAAAGCCTAATGGAAAAGCCCTGCTAAAACCATTCAGCTGGACAACAGGCAAGTGGGAGGGCCTGCTGCCATTTAGGAGCTGAGGGAGGCAGCTGCTGTCAGTTTACAGTGGCACACTTATTAAAAGAGTTGTATCTCCAGGCAGAGGGAAAGGATGGACCCAGTTTCATGGCTGGAGGCAGAAGCTCAGTCCAGCCCTGAACATCCAGGGCTGTGATACGCTGCTGCCCTCACATCTGGCTCTTGGAGTTACATGACCACCGTCAGGCATGCAGAGGACACAGCCCTGAGCGACTTCACGTGTAGTCACATAGAAACTGTGAAGTAGGCTGAGAAACCTGAGTGAGTTGGGTTTTTTTAATCTGTTAATTTGCCTTCTGCCCCAATATGGACAGATGGAAATAAGGAGAAAAGAGGGATGGGAAGAGATGCTGAAGATTGATGTCACTCCATAATGTTTTAAAATTATACACTGGCTTGCATCCTGTATCAAAGGAAATACAGAATTTCATAGAACAACATCAAATGTAAATAAGGACCTTGGCTGTCATTTTATGTGGCTCGGTTCCTCAGATACGCAGGTTGATATTAGTAATTATCTTGAGTTGGTTTGTTGCAGTCTTAGTTTATTGAATCCATGCAGTTTGGCGCAGTCTGTTTACCCATCCAGCTTCCAATTCATTCTCTCATTTTGTTTCCAAGAGCTTTTGCTGGGGTTTGGTGTCAGGAATTTCAGTGCATGCCTAGGTGAGGATGAAGGGGGTGGGGAGGGACCTGCTCTTTTCTTCCAGTCTAGCTTGAGAAGGCTGGTAGATGGGCAGCCTCTGCTCTCACTTCTGCCTGGAGGAGGCAGTGGAGACTGATGGGAGCCTTCCTCTTCAGACAGACAGTCTGGCGGGAAAAGAAACATAGAAAATGATCACAGTACCAGGCACGACTGATTGCAATGAGGTGGGAGGAAAAGGGAAGAGACAAGTGTGGGGGAGGAGAAGTGGCATCCAGGGGGCTTTGGAGGAAGGGTAGAATTATGACAGCTGATGATAAGAAGAATCTGCTGAGTAGCCCTAAGCCTGTTCTAAAAGTTAACTTGCTTTGGCTGGAGCAGAGAGTCCACTCAGATGAGTATGAGTGATATGGTAAACTTCAAAAGGAAGAAAAGAGCAACTCCTTTGCTACCCAAAAGGTACTAGCTGAACTGAGAGGCACAGCACTCAAACCTCTGAGAACTGTGGGAACCCCACAGCACACAGCACGCAGAAGTAACCCTCTGTGCGAGGTCTGCCATCCACAGCCATGAATTCCACAGAGAGGAATTCAGGAAAGAGTCAGACATCCGGCTCTTAGCCTTTCACAACGAAGAGCCAGGTCCTGTGAGTATACTAGAGCTGATTGGCCAATGGTACTGACTCATATTAACCAAACGCATGAAAGCCTGATGTACGAAACTGTCAGCTGTCACTTTATTCCTTTACAGTCAACTAGGTTATAACTTTCAAAGGATCTACTGATGGCAACTTGCCCAGAAAATCTCTGCCTATGTAAGAAAACTACAGGACAAGCTAAATGCTTATGCACTGTCCAGGATGGTGGGCTTCTCTGGTGGCTCAGATGGTAAAGAATCCACTTGCCAATGCATGAGACCCAGGTTCGGTTCCTGGGCTGGGAAGATCCCCTGGAGATGGGAATGGCAACCCACTCTTCTTGCCTGGAGAATCCCCATGGACAGAGGAGTCTGGCAGGCTGCAGTCCATGGGGTCGCAAAGAATCTGACATGATTGAGCAACCAAGTACACACATTCAGGATGGTAGCCACGAATGGCAGGTGAGCGCTTGAAATGTCCACACCGAGATGTGCTGTAAGTGTCAGTCAAATGCCAGATTTCAGAGAGACAGGGCCAAAAAGGGGGAATACCCTATTCATAATTTTTATGTTGATTGTATATTAGACTATTTGACATTTTATACATATCACATTAAGTAACATGTTATGAAAATTAAATTCACCTCTTTTAAATTTTCTAAAATGGCTACCAGAAAATGTAAAATTACACACATGCAATATTTTGAATTTTTAAAATATTGATTTTTTTACTGATTTGGCTGCATCCAGTCTTGTTGCAGCACACAGGACCTCTGTTGCCTCATGCAGGCTTAGTGGCTCCGAGGCACGTGGGATCTTAGTTCCCCAAGCAGGGATCGAAACTGTATCCCCTGCTTTGCCAGGCAGATTCTAAACCACTGGACCATGAGGGAAGTCCCAATTTTGTGAATTTTAAATGTAAAATTACACATTCACAACTTGTGTTACATTTCATTTCAGTCATGCTCTCTTAGATGGAGCCCTGGCCAGTCCAGTGTCTGGGACTGGGAGCTGTTTTTTTATTATTCAGATGTTTAAACATGTGAAAGATATTCAGACTTAAAGCCCAGCTCGACGACTTGAGGGACTGCTCTGGCACTTTACTTTCGTCCATTGTATGTTGACTTAATAGTTCAGCTCTTGCTCTGGCCATTTAGTGACTGATGATCACCACCACGCAGGCAGCTTCCCTGGCCCACATGCCTGCTAGAGTGCATGGATGGACCAGCTGCTGTCATCCACAGTTTGGGCACCAGACTGGCCGGGGTGGAACCCACATAATTCCCCGTCTTCCCTCCCCATCTCATCACCCCCTGCATCTCATACGAATGACAGCTGGTTGCAAAGACCATCTTCGTAGGGAAGGAAGGGAGGACCAAGGCTGACCTTCAGGTCAGGGGGCAGCCTGTAGCCCCTGGAGAAGGGCATTTTGGGGCATTGCTGTGAGCCTGTGAGCCCAGAGCACCAGCCACTTCCCACCCCCAAGAAGGGACCTTTTCTGGCCATCCAGAGTCCTTCAGTTTGGACTGGAACCTGTGAATCTGCACTCTCCACAAGCCTCCTCATTTAAAGCGATGAAGGCTTAGAGGGAAAATCATGTTTTTATTTTTGTTGTTATTCAGTCATGTCCAACTCTTTGTGACCCCATGGACTGCAGCATGCTAGGCTTCCCTGTCCTTCTCTATCTCCCAGGGTTTGCTCAAATTCATGTCCATTGAGTTGGTGATGCCATGCAACCATCTCATCCTCTGTTGTCCCCTTCTTCTCCTGATATCAAAGAAAGACTGAAAACATTTATTTATAGGGACAAAAAAAAGTGCTTAAGGCCCCATACAGGTGGCCCTTGTACCTGTGATAAAGTACCCCCCAGTCTTCAGTTCTCCCCGGTTTCCTGCAGTGTAGACAAGGAACAGGCCAAGCACAGGACCCAAAGTGTGACGTCTTTTTAAGGATTTAGTGTTTTCTTTGTACATTTTCTTACTTGACATGTGAGCAAATAAGCATTTAATTTAATTTAATGTAGTGTTTTCTTTGTACATTTTCTTTCTTGACATGTGAGCAAATAAGCATTTAATCTGTGTTCCACACGACCCAGGCAGGAGGAGTTTGAGGATGTCGGGGTGAGCAGATGGAAGCAGATTTCTCTATGTGGGTAGCTGGAATCTTCACGAAAGGCTTCCTTACCCACCATTTGGCCCCAGAGACTTCCTGTGTGCACCCATCCCTGCCCACAACCCCCGCCTCTACCAATCTGGCCGTGCCTGAGGAGACGAATCTTCTTTGTACACCTTTCAGGAAGTGCTGTCCCAGGGTCTGTAGGTTTATTCCTCTTCTTCTAAGAAAGGGATTTGAGTTACACTGCGCTAATTTAGTGTAGGGCTGTCTGGGTTCTTCTCGACCCCTCCTCTGAAAATGAGTTGTTTCTACTTCCACTTGAGGTCGTGGGCAGATCTGAGTTCAGAACCCTAACCACCAGATGAATGGCTTCTTCTTTTCCTAAATTGTTCCTGTTTCACTCTCAAACGAGCAGAACCTAAGAGATGACACCTTCCTTAAGGCTCCATCACTTGCACATTCAATTAGTAAATGCGAACTCGCTGTCAGAATAACTTACAAGCAGATGTGAGAAATTTTTAAGGAAGCCAAGATACACATTTTGTGCTTCCCTGCTGTCAAAACGACCTTAGGTTTCTGAAGAGTGTTAAAAATTAAGTATTGTGTACATATTTTGTATTATGACTTTATTTTTTAGAGCAGTTTTAGGTTCACAGCAAAATGGAACAGAAGGTACAGAGCGTTCCCATTTACTCCTCCCCCCACGCCCACCCCCCACCATGCACAGCCTCCCCACCATCAGCATCCCCACCAGAGTGGTCTGTTAGCTACAGCTAAATCCACACTTCCATCACAAGCCTCAGAGTCACCTGTGGTTTTACTTAGGATTCACTCTTGGTGTTGTACATTCTATGGATTTGGACAGCTGGATAATGACATGGGGGCTTCCCATGGTAACTGGTGGCTCAGTGGTAAATCACCCGCCAATGCAGGAGACACAGGAGATGCAGGTTCGATCCCTGTGTCTGGAAGATGCCCTGGAGGAGGAAAGGGCAACCCACTCCCGTATTCTTGCCTGGGAAATCCCATGGACAAAGGAGCCTGGCGGGCTACAGTCCTCGGGGTCGCAAAGAGTTGGACATGACTTAGCAACTAAACAACAACATAATGACATGAGCCACCATTACAGTGTCTTACAGAAGAGTCTCACTGCCCTAATATTGCATTTATTTTATTCTTAAGCACATGACTTCTTCTTACAACACATATCAGAGAAATGAAGGTTTACAGGACCTCAGTTTTCAGAAGTGGCACATCTCTGTGTAAGACATGGTCACACAGAGCTAAGGGGTTGAATTGACTAGAGGAGATAACCAGGCAACACAGGACTTCTCCGTACCCGCAGATGACAGTGGCCGGCAGAGTCTAGGGCTCCGTCTGAGTTCATCTCTTCCAGTCTGTCTGCCACAGCCCTCAGACGTGCCAAAGGACTGGGACATTTTCATCCTAGTTTTCCCAGTGGTGCTGACCCAGTTTTGTTAGGTCATGCTATAGGATGAACCCAGGGTGGGAGACCTTACCTTCCCATCGACTCACGACAGCATTCACAAGTACAACATACTTCCACAGATGCAGCCAGACTCAAGAGAACCCACAGCACTGTGGTGGAGAAGCAAATGTATTTGCTGTATTATTTATAAAAGCACTCTATGTCAGTGTATTGGCCGTTGAAAACTTAAAATTTTTATTTTAAAAGGAAAATTTAATACATCCTATATCTTTTTTTAAGTCTATTGGACTTTATTTTTTTTTAATGAATCCTTGTTTGTCTATGTTTTTTTTTATGCACAGTTTAACAAGCATGTACTCTTATATGTCCATAAACAGGTTCTATTAAAACTGCAACACACAGGATTTTTAACACAACCCTGACAAAAACATACACAGTACAGTTTAATTAGCAACAGAAAACTAGGCCTTTCTGTTTAGAACAGTGCTGTCCAATAGAACTCTCTGTGATGATGGGAAGATTCCATGTCTGTGCTAATCAGGGCACATGTGACTGCTGAGGACATGAACTGCCACGAAGGAACCGATATTTAATTTTATAGTTCTAAGTCATGCACACATACTCAGTCACTAAGTCTTTTCCAAGTCTTTGTGACCCCATGGACTGTAGCCACCAGGCTCCCCTGTCCATGGGACTTTCTAGGCAGGAATACTGGATGGGTTGCCATTTCCTCCTCCAGGGGATCTTTCTGACCCAGGAATCAAACCCACATCTCCTACATGGGCAGGAGGATTCTTTACACTGAGTCACCTGGGAAGCCTCAATTTTTAAGTCACTTTTGCTTAAATAGCTTCATAATACTGATGGTCATCATATCAGACATGGAAGGCCTTGTTGGGTACTCTGTTTCCTGTGCAGAAACCACTGAAGTAGAGATGACATCTTCAAGAAACTGTAGATCCTTGGCATAACTAAGGTTACAAAGTTTAAAGACGGTTTTCAGTGTTAATCCTCCATCACAAATTTCATCCAACAATTGCAAGAGGATCCCTAAAAGTTGGCTATGTCTCTAATAGCTTGGTTTCTGAAGGAAATTCTTGATTTGGGGGAATATAGATCCTCCTGGCTTTGGCTTCTCTCATTTCATGGGAGGAGCTCACTGGGACACCCAGGTAGACCCTGGGTGGGGGGGTGGGGCAAAGTGCATCATCTGCAGGCTGATCACACACACACTGCCCCCTGCCCTCTGGCTGTTTGTCTTCAGGGAGAGCTGACCATGACCAGCGACATGGAGAGCTTGCAGAATGCCCTGTACCTGGACACGGTGCCAGAGTCCTAGGCCAGCAGAGGCTGCTGCAGAGGCTGGAGGAGAACAGAGGAGCCCAGACTTTAGGCTCGGGTGGAATCAGTATGGGCTTCCCTGGTGGTTCAGTGCTAAAGAATCTGCCTGCCAATGCAGGAGACACAGGTTTGATCTGGGTCTGGAAGATCCTCTGGAGAAGGAAACGGCAACCCACTCCAGTATTCTTGACTGGAAAATTCCATGGACAGAGGATCCTGGAAGCCTGCAGTCCATGGGGTCACAAAGAGTCGAACTCAAGTGAGCAACTGAATCAGTGTGGAACCCACAGGTAGTTTTAGGTCCAGAGTGAACCTAAACTACGTCAATGGATAGGAGTAGACTCTGATGTCACTGGAGCAGGGAAAGTTTTAAAGGACTAGCCTCTATGAGACAAACCTACAAATCAAGTGCTAGAGAGGGACCATGGTTGGGTCCCCCACCTCTGCAGTCATCTCCTGTCTTCCCCAGCATCCCCAAGGCCAGCTGTTTCCAGGGACCTGCCACCCCTCACCTTTTCCCCTCTGGCTGTTTGTCTTCAG
Seq C2 exon
GGAGAGCTGACCATGACCAGTGACATGGAGAGCTTGCAGAATGCCCTGTACCTGGACACGGTGCCAGAGTCCTGGGCCAGACGAGCCTACCCTACCACGGCAGGCCTGGCAGCCTGGTTTATGGACCTGCTTAACCGGATCAAGGAGCTGGAGGCCTGGACAGGAGACTTTGCCATGCCCTCGACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACGGCCATCATGCAGTCCACGGCCCGCCGGAACGAGTGGCCCCTGGACCAGATGGCCCTGCAGTGTGACGTGACGAAGAAGAACAGGGAGGAGTTCCAGAGTCCCCCCCGGGAAGGAGCCTATGTGCATGGCCTATTCATGGAAGGCGCTCGCTGGGACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509:ENSBTAT00000006131:79
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development