DreINT0058358 @ danRer10
Intron Retention
Gene
ENSDARG00000062630 | dnah9l
Description
dynein, axonemal, heavy polypeptide 9 like [Source:ZFIN;Acc:ZDB-GENE-050506-1]
Coordinates
chr6:10353720-10354111:-
Coord C1 exon
chr6:10353929-10354111
Coord A exon
chr6:10353836-10353928
Coord C2 exon
chr6:10353720-10353835
Length
93 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
ATCTTGTTTTCTTCTGACAGGGA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GTGAAGACGATCCTGGATGACATCCTGGAGAAACTGCCGGAAGAGTACAACATGTCTGACATCACGTCTAAAACAGCAGAGCGCTCGCCCTTCATTCTGGTGTGTTTCCAGGAGTGTGAGCGCATGAACATGCTGATCAATGAAATAAGACGCTCACTCAAAGAGCTGGATCTCGGGCTCAAG
Seq A exon
GTGTGCTTTTATTGAATTTTTATTTATCAATTCCAGTGTGCTATTGGTTGTGATTTTCATATTGATGTGCTTGATCTTGTTTTCTTCTGACAG
Seq C2 exon
GGAGAGTTGGCCATTTCCTCTGAGATGGAGCAGATACAAACAGCTCTGTTTTTTGATAATGTTCCTGATACCTGGGCTAGACTGGCCTACCCCTCTATATACAGCCTGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062630:ENSDART00000150908:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTCCAGGAGTGTGAGCG
R:
GCCAGTCTAGCCCAGGTATCA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]