MmuINT0051265 @ mm9
Intron Retention
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65647601-65654926:-
Coord C1 exon
chr11:65654744-65654926
Coord A exon
chr11:65647991-65654743
Coord C2 exon
chr11:65647601-65647990
Length
6753 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTCTTCCTATTGGTCTTTAGGGG
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTCAAAACCTTTCTGGAAGAAATACTGGATCGGATGACAGATGAATTTAACATCGCGGAGCTAATGGCTAAGGTGGAGGAACGCACCCCCTACATTGTAGTTGCCCTCCAGGAGTGTGAACGCATGAACATCCTTACCAGAGAGATCCAGCGCTCACTAAGAGAGCTGCATCTTGGCTTACAG
Seq A exon
GTAAGTAAAAGGGACATTGCGGGAGGACATGGCTGGACCCCACAGGGACAGAGTGACAGACAGCCAAGGGCCAGGGCACTGAAGGGCAATTTTTCCAAAGCCATCCAAATGCCTGAAAGCTATCACTACACAGAAGCCAGACTGGCTATGGGGACATCTGAAAGAATGAGCATAGTATTCAGTTCTTGTTCAATGGAGTCTTCTATGTCCGTGGGTAATGACTTGCATGCGTCTACACTGACATCTTTAGTAAAAGAGTTATCATCTCTGGCTGGAAGACCAGCTCAGTGGTAGAGCTTGGCCAGCATGCACAAGGCCCTGGGCTTGATCCCCGGTATCTCAGAAGTATGTATGCATATAATACAGTAACTTTTTGTAGCTTACATTGAAAGTTCAGTCAGGCCCCCAAAGTCTAGACTCCAGACGTGGAGTCTGCTGATGCTGCCATGTCTAGTTTTGGAAGTTATACAATGATAGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAACAAACTACCAAGCAGTAGAAAATCTAGGGTTGTTTGATTTGTTTCCTTTAATTTCCATCCCCACACACATACACAATATGGGCAGGGGAAAATAATATGGAAGATGAGATGGAAAAGCCCAGGCTGTTGAGGGTAGGCAGCATTTGATGGCTTCCAAATTCCATGTCAGCATATAATCAGGTAAATGGCAAAATTCTGCAGCAGTCTCGAATGTAAAGCAAACCCCTTGCCTGTCATATTTTGCATCTCTATTCCTGGGTAAGCAGGTATATAGTAGCAATTATCTTGAGTGGGTTTGCTGCAGTCATAGCCTATTGAAGCCGTGCAATTTGGCGCAGGCTGTTTACCCATTTGACTTCCAATTTGTTCAGTCATTTTTCTTCTAAGAACTTTCACTGTGCCTCTGTGTAGTCAATCATGAAGAATGCCTGAGTAGAGATTGGGAGGCAGTGTGGAGTTTCTCTCCCTTCAGTCTAGCTCCCATGATGTTGACTGATGGGCTCTGTGGGCAGAACTCAGCACTCTGTGGGGAAGGATTCAAAGATACTGACATGGAGTCATCCCTGCAGGATAATCCAATAGAAGGTTCGTAAAGAAAAGCTAGAGGAGGAAGCAGGAAAAGGTCCATAGATCAGAGAAAGAACAGTGAGGCCTTTGAGGAAAGGTGAACAGGCACATTTAAGGACAAAATGACAAGGTTGCTAGAGACCAGAGCAGAGGAGCTGAGAGTCCACCTGCTGCGCCAGAAGCAAACATTTCACCCAGAGAAGCAACAGCATATGGTGAACTTCTAGCATGTGATGGAAGAACCACGTAGAAGTAGTAAGCAACCTGTATGACCTGGAAGGTATTTTCTAATCAGGATCCTCTTGGGAAACAGTTTCATGAGGATGGTCCCCAGAGTGGCCTGGCCATCAGACTCATATAACACACTCTCCCATCTCCATCTGTATCACCAGTCTGGTTGTCTGCCCTGACGACTTCAAGGTGAGGCCTTGTAAGCAGCATCAGATGACCCTGGAGATGAGTGCAGCTTCCATGGAGGAGGAAGGGCAGAGAATGCCCTCCATGACAAAAAAAAAAAAAAAGCAGAGGTCAGAGCAGGGAGAGCCTTTAGGCTCAGAGCAGAAGGGAGCAGCAGAGGAAAGAGACCCCCAAAGGACAGCTGCAACAGTACGGCCTCCCAGAGGGGTGTGTACCAGAACCTGCTAGATGGACCACTGGAAGTCTGCTTCTAAGCTAAGCATGGGCTTAGGTGACCTGACAATCTAGCAGAGACAGGAAGAGCCAATGCTGCTGCCCTTCCCCTCCTCCGCAGTCACTTCACAATTTGAAGCTGATGTTGGCTCAGTGTAGGAAAAAAGTGGGCGGGCGTCTCCAGTCTCCCAGCACATAAGACAAGCCAACTGCCATCCCAAATGAGGCATCACAGTCACAAAACGCCCGGCCTTTAGAGTTAATCACCAAACACCCTCAGCCTTATGATAAAAACATTTGTGTTCCCAGTAAATCAGAACCGACTGGCTGTAAGACCACGTGGGCCCGGAAAGTCCTAGCTGAGCTATGAGATACAGCCCTGAAGGTCTGTAGCAGCTCAAAGCACACAGATGGTGGGGGTGGAGGAAGAAATCTGGGGAAAAGCCAGCTGGCCACCGACATGTCCCTCAGAGAGGATTTCTCTTGGGAATTCACCAATGTCAGACATCTGGCTCTCAGTCTTCCTAGGTGTCCTGATTCCCATTAGCCAGATGCACAAAAGCTTGATCTACAAAATTCCTAAATGCTGATTCTTTTTTTTTTAACCATTATAACTAGTAATTTTCAAAGGAGCATATTCTGATAAAAAGAAGACTAGAAAATTCTCTTCCTACAGAGGTACAAGTGAGAATCCAAATTTTTAGACTTGACCAATAGAATACAGTAGATACTAATGTAAGTGACATATCAGATTTCAAAGATAAAAGACCAAAAACTGTAAAATGTGTCATTAATAATTTGATTATTTATCCAAATATTTGATATTTTAGGTATATTGCATTAAAAGAAACATTCGGAAAATTAGACTCACCTCTTTCACATTTTGAAACAGCTGCCAGAAAAATCTTGGAATCCCCATGAGTCTCATTTCCCTTGGCTAGCCTGGCACCAGGGCATGTCTGGAACTTCTCATTGTTCAAATAATTGATGACCTTAATTTTTTTCCCCTGTGTTTTATTTTTTCTAAGTCTGTGCACTTGTTCAAATGCATAGGCTGGCTGGCTGATGTTGGGTCTTCAGTCCTGCACATTGTTGACTTCAGATCAAGTTGGGAGGAGCACCTTGTTCTGAGCCTTTGATCATCACCCCTGGGCACGTGCCTAGGCCTGATGACTTTGGCTAGCTCGTTCTCTACCAGAGATTCAGATGAGCCGGACAGTGGACCACCTCCGTCTGGAAGCCACCGTGGAAGATGTGGGACCCTTATCATTCTATTTCCTCCCCATCTCCTGTTTCCTGGTGACTTGTGTAAATGAAAGCCAGGCCCAGAGAGGATGATGTGTCTATAGGTCTACCATCCCAGCCCTTGAGAGGCAAGATTACAAATTCAAGGCCAGTCTGAGCTATGGAATGGAACTCTATTCCTAAACACTACGGAGAGGAGAGATCCTTCAGGGATGCAGTGCTTCCCTAGAATGTGTGAAAGCATCAGGCTCAAAACCCAGGATGGCGTGGGGATGGGGTGAGGGAAAGCTAGCTTCAAAGACCATTTTCCTGAGAAGAATGGATAGGGAGCTGGCCATGAGCCCTCAGATAGAGGGGGCATGAAGCCCTGAAGAGAAGTGTCATTGCCAGCCTGTCCTCTTTGGATTAAATGCTTCTGCTGCCGTGTGAACACAGCCTGCCTACGGATGACCTTCCAAATGGAGGTTTCTCGGCCCGCCTACCTCCTCCCTTTGCTTTGGTCTGACTTCAGCCTATGAATCTAGCTTCTAACACACTGTGACTCAAAAGAACGAGAGCCGATAGGAAAAAAAATAAAGTTTTCACTCTATTGTATCAAAGAAAGATTATGAAAGCATTTATTTATAGGGATGAATAAAATAGATAAGGTCACAGACACGCTGCCTCCATCAGACTTGGAAAAGGTGCCACATGGACTGCCATGTCTCCCAGTTTCCCATCAGTGTGGAAGCCGAGGAAGTGTGTCACGGGCCTGGGAGGAGATGGAGGAACCAGATTTCTAAGTTTTCTTTTTGCTGACCCCCATGTGAGTAAGTCCGTTTAGACAGGAATCAGTGCTGCTCAGACCCAGGCTAGGGAAGGCTAGGAAACCATTTTCTTTACTGTACCACAGTTTTTAAGAAGAGCTCTAGTAGGAGCTGCTGACGGCCCATCCATTAACAGCACATGTTCTTATAGAGGACCAAAGTTTGGTTCTCAGCACCTATGGTGGGTAGCTCACTACTGCTTATAACTTCAGCTCCAGGGAGCTAACACCCCCTTTTGGCCCCTGCAGAGAATGCAGGCAGGCATAGACACATTTGCTCATACCTACACACAATTTAAAAGACGAAAGTGGGCCCTGGTGCCCAGAGTTTGGCCATAGACTCTTCCTATCCAGCTATGACAGCCTCCGCCAACCTGGCAACATCTTAGGAAAATGTCCTTTTGTTTGTTCTGAACACCTTTCAGGACAAACTGTACTCCCCTGGGCCTAAGATGCCAACACAGGCACACTTGAGTTGGGAAAGGGCATCGTTGCCTCCCAGCTCCCTAAAAATTGAGCCTTTCTACTTCTGCTCAAAGTAATGAAAATATCTGGGTTCCGAAACCACACTATGAGGGGCCTCTGATTCCGCAGTAGTTCCTGCTTCTGTGGGAACAAGGGGAAGCCTGGGAGGCGCGACATTCTTCCCGTTTCTCTTGCTTGGCATTCAGGTTAGTCAGTGCACATGGCTGTCAGAATACATTATAATATCACAAGAAGACGTGAGAAAACTGTTAAGGCATTAAGTGACATACTCTGTGTACCTCTGCTGTCAAAGGAGGTTAGATTTCTGAAGGGTGTTAAGCATTAAGTGTTGCATTTTTTAAAAAGTAGACCTTATCTTTTTCTAGCATAGTTTTTAAGTTCAGAGCAATTACAGATTCACATCAGGCCCTTGTCCCACCACGCAAAATACTCTTAGCATCCCCAAAGTCTGTATTTATTACAACTGAGTTCATGTTTCACTTGGGGATCTCTCATGGTGTTGTTGCCCTTCCTATGGGTTCCATAAAGCATGGTTTCACTGCTGGTCACACTTGTGTGGAAGGGAAGTCAGTTTGTGTGGATGTATGTGCGTGTGTTTGGGGAAGGTATTCACAGACACACAAAGACACACACAAAGACACACACACACACACACACACACACACACACACACACACACATGGAGACCAGAGCTCTGTCAACATTGAACCATGTTGTTCCTCAGGAGCCATTCAACCTGTTAGGGACTCTCATTAGCCTAGAACTTAACAATTAGACAAAGTTATGGCCAGTGAGTCCCAGGCACCTGTGAGTCTCTACCTCTCCAGCACTGGAACACAAAAGCACCAACTTCATGCCTGGTTTTTTGTTTGTTTGTTGTTTAGTTGTTTGGTTTAGTTTGGTTTTAACATGGGATCTGGGGAATATACCGCAAGTCCTCATGCTTGCCTGGCAAACATTTACCAACTAAACCATGTCCCCAGCCCACTATACTTATTTTAATAGTAAGCACATCATTTTTTTCTTAAAACTCAAAGCCTTGGTTTCAGGCTTCACAGGGGCCTGGTAACAAAGTGTTTATTGACTTGGCCAGAGGAGATAACCAGAAACAAAGGACTTCTCCGTACAAGCAAAGGGCAGCAGTAGGCACTGTCTGGAGTTCAGAATGACTTATAGATTTGTCTCACTCTGACACAGTCCTCTAAGTAGGCCACTTGAGGACCAGGAGGGCATATTCATCACACTTCGGTGACACCAATAGTCTGTGCCCTAATGGCTTCTTATGAATCCTGTAGGGCTACAGTTTGGGACAAATCCAGAATGGAGTTATTCTCTATCTTCTCACATGACAGAAATTTTCCCCATGTACAGTAAGTAATTCCCATTGATAAACCCAAACTTGATAAAGCTCAAACCAGTTTTATGGAAAGGCAAACTTAACTGCACCATTTCCCAGGCAGGCATGGTGATGCACACCTGCAAACTCAGCGCTTGGGAGGCTGAGACAGAAGGAGTGTGCATTGGAAACTAGCCTTGGTTATGAATTCTCTCTCTCTCTCTCTCTCATACACACACACATATACACATACACACACTTTCATGTTGGCTCTGTGGTACTTTGCTTTTTGTAATAATCCATTACTTTTGTACATATCCTCTTAACCAGATTGGCAAGCAAATGGTAATATTATAGTCATATAATACTTTTTTTAAGCTGTAACATAAAAGATTTTTAGCATGCCCTGGCAAAAGTACATACATTCTACAGTCTCCATCAATGGGAAATGTAGCCTTTCCACTCAGAGTAGGAACACTCTGAGAACCTAATTTAATGCCCAGGCTTATTATTCTGTTTATTTCTGCTGTACAGAACAGACCAAGACATCAGCTCTACCCTGTCCTCCTGCATTTCCTCAGCCCCTTGATGTATTACATAGTCACACATGCTCTTGGTATCCAGAAGAGCCAGCTTAAATTTTACCCCCCAACCCCTGACAAATGAGAAGACCAGCATCTTTCTCTACCCTGCTATGCCATATGACTTCTTTACCCTCACTCAGACTAGGATGTAAGACCAAGCAAAAAACTATGCATGTTGAAGCTTCTATGGTACTTGGGACATCCATGCCTGCCAGGCCACATAGGGCTACTGGGTACATGCAATGCTGCCAACAGGACTTAGAAAGTGTTAGCCCATGAAAAAGTTTCTGACTTTGCTAGAACTACCATGGGAGCCTTCAGTACCTATGCCCAGTAATTGCACTAGGAATTAAGCTCACATCTGTACTGCTGCGGCTGAAGTGGCAACTGTGGGTACTAGGCATGTTCTAAAGCACCAGCCTTGGTAAGACAAATTCTGCAAAGCAAATACAAGACAGAACCACACTAGCAGCCAGTACCGCTGGAGTCAGCTCCCATCTATGAGTCAAAGGACACAAAGACTAGTGCTTCCAGAGACTTCTGCCTCCTTAACTCTTTTTCTTCCTATTGGTCTTTAG
Seq C2 exon
GGGGAGCTGACCATGACCAGTGAGATGGAAAACCTACAGAATGCCCTATATCTAGATGTGGTCCCAGAGTCCTGGGCCAGGCGAGCCTACCCTTCCACAGCAGGCCTGGCAGCCTGGTTTCTAGACCTGCTTAACAGAATCAAAGAGCTGGAGTCCTGGACAGGCGACTTCTTGATGCCCTCAACTGTGTGGCTGACGGGCTTCTTCAACCCCCAGTCCTTCCTGACTGCCATCATGCAGTCCATGGCCCGCAAGAATGAATGGCCACTAGACCAGATGGCCCTGCAGTGTGATGTGACAAAGAAGAACAGAGAGGAGTTCCGGAGCCCTCCTCGGGAAGGGGCCTACATCTATGGGCTCTTCATGGAAGGTGCCTGCTGGGACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-Dnahc9:NM_001099633:67
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(13.5=100)
A:
NA
C2:
PF0302810=Dynein_heavy=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: