BtaINT0052327 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038691 | DPH7
Description
diphthamide biosynthesis 7 [Source:HGNC Symbol;Acc:HGNC:25199]
Coordinates
chr11:105575808-105577295:+
Coord C1 exon
chr11:105575808-105575895
Coord A exon
chr11:105575896-105577200
Coord C2 exon
chr11:105577201-105577295
Length
1305 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GATGGCTTCCTTCTCTCTAGCAG
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTGTCACGTTCCAGTGGCTGGTCATCCCCTCTTGGGTGTGGCAGATGCTTCTGGGTCCATAGAGCTCCTCCGCTTGTTGCCATCTGAG
Seq A exon
GTCAGTGACTGGGCCAGGCTTCATGAGGGGTGCAAGGAACATGGAGGGAGGCTGTGCTGAGATGATCTGTTCAGTGGTGACCTTTATCGTGAAATGTTCTAAAGTAGCACACAGTCTCTTAAGTTCATGGGTTCTACATCTAACTCCAGGAGGAAGACACTTTGTGTGTCACCAGCAGAGAAGCTGAAGCAACAGGCAGGTCCTTTAACCTGACAAGGGACGTGAACACCCTGTTAGGAAAGCCTGGGCCAGCATTCTTGGGCTGACGGTGCTGGGGCAGGAAGAGCAGTGTTTCCTGGGTCGAAGTGGTGTTTATCATCTGTAATTAAGAGAGCATAGGATTTCTCTGGGCTTCCCCAAACACGGCTCAGTGGGTAAGGAATCCGCCTGCAGTTCAGGAGATGTGGGTTTGATTCCTGGGTCAGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTTCAATTTTCTTGCCTGGACGAGCCCATGGACAGGACCCTGGCAGACTACTCCATGGAGTCACAAAGAGGCGGACACGGCTGAGCAACTTAGTGATGTGTTGTCCCCCAGGCATCTGACAGCAATCCCACATCACACATTTGTAAAATGCCCACATGTTGGGGGACGGGAACAGGTGAAAGAAAGACCCCTGACCATGTCTTGACTCAGTGGGCGAGGGGAGTGGAGGGGGAGGCGCTGATGCAGGCGCTGCGAGTGGGCCTTGGAGCAGGTCCAGCTGTCCACGGTGCTGAGCGCTGGTGAGGGCGGCCTTGCTTCAGACCTGCTGAGAGCAGTGGCCCTGTCTCAGGAAAGATGGCAGGAATGCCTAAGGAGGACTGGGCTCAGAACCAGAGCTGGAGGCAAGAATAGGAAAACCCAGGAGACAGCACAGCTTCTGGGACCCTGCAGATAGAGTCAAGCCCAGGGAAATGGCATTTCCATGGCTGGCTGTGTCCGGGCGAAGCGAGACCGGGGACAGTTCCCTTTGTCTTGTCCCTGGAGGCCCTGGGCGATGGGAACCCACAGCAGCAGTGCTTCCAAGAGGCTGCGTGGGTGCTGCGCTAGTCTCCAGGAGGGCTTGCAGCTAGTCTCCAGGAGGGCTTGGGCAGCAGAGAGACCCGCTTCCCCTGAGGTCTTGTGTGTGGGCAGGCCCTCCTTCAGCGATGAGGACTCCTGGAGCTGGTTGGGCAGTGTTCTCAGGCTCTGCTCCGCAGGGTGCCTGAAGACACACGTCCCCTGGAGTAGACAGTGGCCTCCTCCGTGTGCCGGGGCCGCTCGTTCCCCTGTGATGGCTTCCTTCTCTCTAG
Seq C2 exon
CAGGACACTTGGACACTACAGCCCTGCTCCCGCTTGGCCCTGGAAAAGCAGTGTCTGGCCTTGTCCTTGGACTGGTCCACTGGGAAAGCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038691:ENSBTAT00000063228:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACGTTCCAGTGGCTG
R:
CTTCCAGCTTTCCCAGTGGAC
Band lengths:
183-1488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development