RnoINT0050766 @ rn6
Intron Retention
Gene
ENSRNOG00000008102 | Dph7
Description
diphthamide biosynthesis 7 [Source:RGD Symbol;Acc:1304868]
Coordinates
chr3:2171515-2173408:+
Coord C1 exon
chr3:2171515-2171602
Coord A exon
chr3:2171603-2173313
Coord C2 exon
chr3:2173314-2173408
Length
1711 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
3' ss Seq
GTCCCTTTTCTCTCCAGTAGAAG
3' ss Score
6.14
Exon sequences
Seq C1 exon
GTGCCATATCCCAGTGTCTGGCCATGTGCTTTTAGGCTTGGCAAATGCCAGTGGATCTGTAGAGCTGCTCCGCCTGATGGAATGTGAG
Seq A exon
GTCAGTGAGGCTAAGTTTTAGAGGGAAAAGGACCTAGTGGAGAGTGTTGAGGAGGAGACTACGGTGGTGCAGACATTTTGTAGAATGATCTCTTCCATGGTAAAGTCTACCAAGTCTGTCATAGATGTTTTAAGAAATCGTGGAGGCAGCTGGGCTGTGGTAGCACATGCTTTTAATCCCAGCACTCTGGTGGCAGAGGCAGGCAGATCCTTGAGTTGGAGGCCAGCCTGGTCTACAGAACAAGTTCCAGGAGAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAACAAAAAGAAAAAAAAATTCTTGGAGTCTATTTTAAGTTGTACAGTGTTCTTGTGAGATGAGGCCACCTGGAATAGCCAATAGAAAGGTGTCAGTAGGTCTGGGTCTCTGTAGGGGATGCATTACAAGCCTGTCTTGGGTTTACACCAAGGCTCAGAATACCAGCAAATTTCCCATGTGCCTGCACCATGCCCACAGAGGCCAGAAGGGGTCAGGTCCCTGGGCGCTGGGCTTGAAGTTAGTTGTTAGCTGTCCGATATGGAGGCTAGGAACTGAACTCTGTCCTAAGGAAGGGTAGGAAGAGCTTGAACCACTGAGCTCAGAAATGATATATCTTACAGGTTTAGAAGAGTTGAGTTCCTAAATGACCTGCCCATGTGTTTCATGGTGATCCTGATTCATGCTTTAGCAAAATGACTGATTGTTTATGAGGAGGACTGGAGCAGATCTGTGGGGATAATGGGGCACATCAACAAACTACACACTGCCCCAACTGGGGAACGAGGACACACATCAATGGCCGCTGCTGTAGTGGGGTCAGGGTAAAGATCTAGAAGACGCTGACTGGAGGCAACTGAGCGCCTGGTTAGAAGTCGTGCTTCAGGTCTGTGCAGTGCAGCCTTGCCCTAGAAACAAGAAAGAACTTTGGCATAGCGGCCTGCTGCGGAAGCCAGACACTATTCAGGTAGTTTAGATAATAAGACTCACATAGAGCCTAGACAAGAGAAGTAACTTCTCCTTGTTTTTTGTTTTTTACTAGGAGGTTCATGACAAGAGTTTCTCTCTGTAGCTCTGGCTGTCCTGTAACTCTGTAGACCAGGCTGGCCTTGAATTCACAGATTCCACTGCCTCTGCCTCCCGAATGCTGGGATTAAAGGCATATGCCACCACAACCTGGCTGAGAAATGACATTTTAGCTGCTGCTCTGGCTTCTGAAATGGAAGCAGAAGAACATTCTATTTTCCTTATCTCTGGGAATATAATGTGCCAGGATTCCAAAGGCAAGGGTGATAGAGAGTATGTTTCAGTAGTGGTTTGTGGAGCCCACTGTGTCCTCAGGTCATGTCCTGTGCTTGATACGTGGCAGGGGCTCTCTGGTACATGAAACAGTCACTAGGGCACAGTGGCAGACTGCTTGCCTAGCATGCATGAGGCTTCGGGCTCTATCTAGGTTTTAAAGCTATTAAAGCATAAACGACAACAAAAACCTAGGCGAGGCAGAGCCTCCCTCTGCTACTAAGTACTTGGGGAGCTAAGGTGAAAGGATTGTTTGAACTTGAAAATTCAAGGTGAATCTGAGCAACTTAGAGGAGACCCTATCTGCAAAAACAAACAGAAGCAACTGATGTGCTTTGCTCATGCAGGGAGCACCTTAGGCATTGGAGGCTTGCTTACATAAGGGTGTCCCTTTTCTCTCCAGTAG
Seq C2 exon
AAGAACAGCTATACCCTGCAGCTTATATCCAGCCTTGCCCTGGATGAGAGCTGTCTATCCTTATCACTGGATTGGTCCACTGGGAAATCTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008102:ENSRNOT00000046898:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCATATCCCAGTGTCTG
R:
TTACAGATTTCCCAGTGGACCA
Band lengths:
182-1893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]