BtaINT0052825 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141976399-141982338:-
Coord C1 exon
chr1:141982057-141982338
Coord A exon
chr1:141976675-141982056
Coord C2 exon
chr1:141976399-141976674
Length
5382 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
TCTCTTCCCCGAAACTCCAGAGC
3' ss Score
4.92
Exon sequences
Seq C1 exon
CAGACCCAGCGAACTCAGCCCCGTCCATACTGGATGGGTTTGATCATCGCAAAGCCATGGCAGGGCAGCGTGTGGAGCTACCTTGCAAAGCACTTGGGCACCCTGAGCCAGATTACCGCTGGCTGAAGGACAACATGCCCCTGGAACTTTCTGGAAGGTTCCAGAAGACCATGACAGGGCTGCTTATTGAGAACACACGTCCCTCAGACTCAGGCAGCTATGTGTGTGAAGTGTCCAACAGATATGGAACTGCTAAGGTGATAGGCCGCCTGTACGTGAAAC
Seq A exon
GTAAGTTGGATGGTAACTGGCAGTGGTGATGCTAGCTGCCAATGGTGGAGCTCCTGTTACAAGTGACCCCCTGGCCTTCTCTGTAGCTCCCATGAATCCTCACTCCATTTTAGCCCCATTTCACAGATGAGGAAATCAAGTCTTCAAATGCTGGAGGTTACTCCTTAGAAGGAAAGTTATGACCAACCTAGACAGCATATTGAAAAGCAGAGACATTACTTTGTCAACAAAGGTCTGTCTAGTCAAGGCTATGGTTTTTCCAGTGGTCATGTATGACTGTGAGAATTGGACTATAAAGAAAACTGATTGCTGAAGAATTGATGCTTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATCCTAATGGAGATCAGTCCTGAGTGTTCATTGAAAGGACTGATGTTGAAGTGAAACTCCAATACTTTGGCCACCTGCTGCCAAGAGCTGACTCACTAGAAAAGACCCTGATGCTGGGGAAGATTGAGGGCAGGAGGAGAAGGGGCTGACAGAGGACGAGATGGTTGTATGGCATCGACTCAATGGACATGGGTTTGGGTGAACTTCGGGAGTTGGTGATGGACAGGGAGGCCTGGAGTGCTGTGGTTCATGGGGTCGCAAAGAGTCGGACATGACTGGGCAACTGAACTGAACTGAACACAGCTGGAGAGTCTGGGGCCACAGTATCCAGCTCCAAGATAACATTACCTAGCTGTTGAATTCAGAATGGCCAGCCAGTCTGCAAATCAATGGAGGGAGATAAGCAGGGCGGTGCTGTTAGCACAGGCAATGGTGATCAGATCAAAGGAGTTGCCCTTGGCCAGTTGCCAGATTCTGCTTTAGGTTTCTAAATGGGGCTTTATCACCTCTCTACAGGGCTGAATCTAGAGCTGTAATTATCTGAAAATTGGACTTGGATTCAATATTAGAGACAATTTAGTCCAACTATGGTGACTATAGCTTCCCTAGGGGTCCGTGGTAAAAACAGTGAAGTGAAAGGCACTCAGTCATGTCTGACTCTTTGTGATCTCACGGACTACACAGTCCATGGACTTCTCCAGGCCAGAATACTGGAGTGGGTAGCCTTTCCCTTCTCCAGGGGATCTTGCCAACCCAGGGATTGAACCCAGGTCTCCCACATTGCAGGTGGATTCTTTACCAAGCTGAGCCACCAGGGAAGTCCCAGTAGTAAAAGAACCTGCCTTCAATGCAGGAGAAGGCATTCTATCCTTGGGTTGGGGATATCCCTTGGAGAAGGAAATGGCAAGCCACTCCTGTATTCCTGCCTGGGAAATCCCATGGACAGAGAAGTCTGGTGGGCTACAGTCCATGCAGTCACAAAGAATCAGACACAACTGAAGCACTAAACAATAACATGATGAATACATCTCATCTCTAAACTGGTCTGGAATGACCAGTGTGAGGAAGATGATGAGAAGGAGGGTGAAGGCAGACAGAGGAAGAAGGGATGTGATTTCAGGGGTACACTCTCTAATCTATTTATAAAGCCTTAATTTTATTCATGCAGAAACAAAATCAAACTGATTTTACTCAAGATCACAGGACCAGAAGTGAGTGGTAGAACTTTGGTCAAAATATATGGCTCATAGTTGCCAGTCGGATAATATGTATATTTGTATACAGAAAAATTTGATGAACTGAACAAACTGAATATGAGTCTGGCATTTAAAAGGAAGGCATTTTCTTATCCTGGCTTTTTTCTAGCCTTATGCCTGTTTATGGAACCACCTCTTCAATGTTACCATGGATGTAGACAGCTTTAGCACAATACCAGCCCAAGTGAGTCCATTTGAAACAAATATCCCAAAGACTGCCTGGAATCAGCTGTCCAGACTGAGTCCTGCAAATGTCATTTGAATGTGCTTAGGCTGATTTTTGCTAGAAATGGAGGGTAATGTCTGAACAATTATATTTCTATGACTGAAGTGCCTTGTTGATGAAACAATGAAACATTGGACAGCTAGTGAGAATTATTCCAATGGGAGGTTCAAAACCACTTTTTGTGGCTCCTCAGTTTCTGCTGAATAATATTTATATATTAAGATAGTGGGGAAAGCCTGTCAAGAAAACCTGTAAGGTCACATTTCCCATCGTTTTGCTTCAAAAAAACCTACTTCCTGTGAAATCTAACTTCCTTCCCACTATAAGCAGTTCCTTCCCTAAAAGTGCAAGCCATGCTGCTCCCTCCACATGGAAGATGATTTTCAAATACTTGAATGTCTAAAACTCCCCATCTTTCTAAGTCTAATGCAATGCCTTATTCCCCAGGCATTCCCCATTCCACTCCTGTTTTCTGCTCAAAGCTCAGAATAGTTTATTGCTTTCTCTGTAAAGACATTTATCCTTGTCTACGTTGTAAATGACCCTGATACTGGGAAACATTGAGGGTAGTAGAAGGGGGCAACAGAAGATGAGATGGTTGGATGGCATCACCGACTCAATGCACATGAGTTTGAGCACACTCTGGGAGATAGTGAAGGACGGGGAAACCTGGTGTGTTGCATTTCATGGGGTTGCAAGATGTTGGACTTGACTGAGCAACTGAACAACAGTAACACATTGTAAAAGTTATCTGTAGGAAAGTCTTAATTCTGAATATGTCTGTTTTCCTGTTTGTATTTGTGAGCCTTGTCTGGAAAAATTCCAGGTATGCCTCTAACACTCCATCCTCCCTTCTGACTGGTCCTTAGTTTGGTCTCTCTTTTCCAGGTGGACATGATGCTCTTGCAAATTCAGAACATTCTCCTCTTTTATTTTTCTCTCTTTTGTTTTCTAGTTTCAAATTCCTCCCCTCTGAAAACAGCCCTGAATTTGCAGGTTCAGCCTCAGCCTCCTTGGGTGTCAGAAGAACATATTTCCAAATTTTATATCAGATGCTCAGCAGGAGTATCCCAAACTGCTCTCTACCATCTCTGGCATGTAAATGACTCCTGTTATCCTAGACTCCTTCTACCCTCAAACCCTCCAAATGCAAGCTTTAAGCCCCAGATCCTCTTTGAGACTTCCCTTTCTAGGTCTAATTCCTGCCAATCCTAGAGATTGTATCTCAAGGCCTTTCTCAACTGTGCTCCCCACCTCCACCCTGTCCTAAATTGAGTTTTAATTGAGTCACAGCTAGACATCAACAATTACTCCTTGCTGACCAATTTTCCTATTATCATTTGTGCAACACAATACGATCAATCGATTCTCCTAAAAATGTGTTTACTCTATTGCTCACTGGCTAAAAATTCTAGAAAGCTTTCTTCAGTTCCCACTGTTGTTACTGTTGTTCAGTCTCCAAGTCGAGTCTGACTCTTCATGACCCCACGGGCCACAGCATGCCAGGTTGCCCTGTCCCGCCATCTTCAGGAGTTTGCCCAAGGTCACGTCCACTGAACTGGTGAGGCCATCCAACCATCTCATCCTTTGTTGCCCTCTTCCCCTGCTGCCTTCAGGTCCCTCTGATTTGATGCAGAATCTTGAGGTCTTCTATTGGACCCTTTGGGTTACTATCTTCATTCTCGTATTTTGCTTATGCACCTAAAAGACTGAGCTTTTTAAAGACTTCACAATGTGGTGACTAAGAAGTCAGTAATAACTGACGCAAACAGCTGATAGCTGCCATTTACCTGTTGTGTGGATTTGGTTAAATATCTCTGAATAACTCTTTCTTCGTCTGTAAAGTGGAGATAACATGAAACTTGCAGAACTGTGGGGAGACTGACTTAACGAAGGTAACTATGGGACATGCGAGTTGTCACAAGTGCCTTTCATTTTCATCTTCACTTATGAGTTTAATGCTATTCTTGGCATATAAATGTTCAAAAATGCTTATGGCATTGAACTGGGTTCATTCATTGTTCAATGAAAACATAGAAAGTCATGGATGAGAGTTACCACCTTGTCCAAAGCAGCTTGCCTCATTTTAAAGAAATAAAAAACCTTTCTCACAGTTATACATTCTACAGCAACCTGCTTCCTTGCAGCCCTGTGCTGCTGGCCATGGTTAAGCCACATAGAGGATATGAGTGAGTTTGTGTGTGTGAGACTGGCCCAGAGGAAACCCATCTGTGCCAAGTTGGGATGAGGCAGATAGATTTAAATATTCAAATATATCCATCCTTGTTGGCTCAGCCATTGCAGTTCTTACTGTCAGTGGGTTAATACTCACATTTACTGAGAAAGGAATCTGACCAACACCAGTCTATCTGCCATACAGTGAAAGAAGGCAAGAAAAAGAAAAGAAAAAAGCCAAAAGCAATGAGGATGTTCCCAAACAAAATGAAATAGCACTGAAATAAGAACATGCAGAGTGTGGCCTTTTGTTTTTAAGGTTCCTTTTTAAAAATTGTTGCAACGTCATTCCACACAAAAGCATTAGAAACATAGCAGTCTTAACACGAAGCTCACAATTGATTATTTCAACAGACAATCTGTATGCATTGTCATTTACATGGTAAAGTAGCTAACTATTAAAAAGATGTTCTTTCTCAATCCCTCTGCTGCTTTAACTCTGGGAGTATTCCAGGTAGAAGGCCTATGTAGTGCTATTTACAAGTACCAAATTACGACCGTATTGTTGTTGTTCCGTTGCTCAGTTGTGTCCAACTCTGCAAACTCCTATACTGTAGCATGCCAGGCTTCCTTGTCCTTCACTATCTCCCAGAGTTTGCTAAGACTCTTGTCCAGTGAGTCAGTGATGCCATCCAGCCATCTCGTCCTCTGTTGCCCCCTTCTCCTCCTGCTTTCAATCTTTCCCAGCATCAGGATCTTTCCTAATACGTTGGCTGTACACCTCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTTCTTCCAGTGATTAGTCAGTGTTGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAGGACCACAGTTTGAAAGCATTGATTCTTTGGTGCTCAGCCTTCTTTATGGTCCAACTCTCACATTGGCAAATGACTGCTGGAAAAACCATAACTTTGACTCTATGGACTTTTGTCGACAAAGTGATGTCTCTGCTTTTTAATCTGCTGTCTGGGTTTGTCAAAGCTTTTCTTCCAAGGAGCAACCGTCTTTTGCTTTCATGTCTGCAGTCACCATCCAAGCAAGTACAAAATTAAGACTGTATAACTTACATAAATCCCATTAACAGCTCAATTTAATATCTTTGACTATTCAGTGCTCTGTATGAGGGAAAAACCTACCTTGACGTATTGCCAAATGGCCAAAAATGCTTGTGAAGATACATTTGCCTTGTCAAAAGTCCACCCTGTTGAAATACTCTCATGTGTGATGTTTTTACCTTCTTTTTTTCTCTTCCCCGAAACTCCAG
Seq C2 exon
AGCCACTGAAAGCTACCATCAGCCCCAGGAAAGTTAAAAGCAGCGTGGGCAGCCAGGTTTCCTTGTCCTGCAGCGTGACTGGAAGTGAGGACCAGGAACTCTCCTGGTACCGAAATGGTGAAATACTCAACCCTGGAAAAAATGTGAGGATCACAGGGATCAACCACGAAAACCTTATAATGGATCACATGGTCCGAAGTGACGGCGGAGCCTACCAGTGCTTTGTGCGCAAGGACAGGCTGTCCGCTCAAGACTTTGTGCAGGTGGTCCTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754:ENSBTAT00000006240:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=90.5)
A:
NA
C2:
PF0767911=I-set=WD(100=94.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development