GgaINT0111546 @ galGal3
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111858537-111861398:-
Coord C1 exon
chr1:111861120-111861398
Coord A exon
chr1:111858813-111861119
Coord C2 exon
chr1:111858537-111858812
Length
2307 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTTTTGGTTTAAATCTGCAGAAC
3' ss Score
7.45
Exon sequences
Seq C1 exon
ATCCAGCGAATTCAGCTCCATCTATTCTAGATGGGTTTGACCACCGTAAAGCCATGGCAGGACAGCGAGTGGAGCTGCCTTGCAAAGCATCAGGGCACCCCACACCAAAGTATCGTTGGCTGAAGGACAACATTCCCTGGGAGCCTGACAGCAGGTTTCGGCAGACAGTTACAGGTCTGCTGATAGAGAACACACGTCCCTCAGACTCAGGCAACTATGTCTGCGAGGTGTGGAACAACTATGGTACTGCCGAGATGATAGGGCGACTGTATGTAAAAC
Seq A exon
GTAAGTTTTGGACTGACTGAAGGTCTTGCACTGCCTCTTGCCTGGACATTTGCATGTGGGAAGATGTTGCTATATCTTTCTGTACCTTCCATTTTGTTACTTTACCTTAGCAGTGCTTAAACTTCCCAGAATTTTGCAACATTAGAAATTAGATTCTGGGGAGATGAGTTAGTTGGACAATTGAGTGATCAGAAGTGCAAATAGATGCAATTTATAATGTAACTATATAATTTATCACACAGAGGATATGTAATTTAGAATCTTCAATTGGATGCTTAGAAAGAAATTGCAAATGTTCTCATGAATAAAGCTGCCAAACTCTTGTTGCCATGACTCATGCTGTTCAGTAATATTGAATACTCATACCTCCTCTCATGTTGAGTATTCATGTGTGAATATTCTGAATGTTTCACAAATTCTAGCAAAGATAATTATTACTCAGAAGCACTGCACTGGAAAAGTGTTATTCTTCTATTGTTAAAGAGAAATGATTTCCCGGAATAGAAATTACACTTTGTGAACTAATGTTTCCACCTGCGTAGCACAACTAGCAAACTGAAAAGGAAGAACAGTTCAGACCATTAAAATGTCTTCACTAATAATTACACATGATGGATTTGGGCAAAATAAAACAAAGATTAAAGATCAATAATTTGTGATTTAAAACTAGTGAGCTTATGCATTAAAATTCAGTTTGTCATGTATGGCACAAAATTAAAACTTTCAGAAACACATTGTGATGGAGTTGCTGGTGATACTGAATGTATCCCCAGATCCTAGTGATATGTTTAATGTATAGACTCAGTGATCAGCCAGCAAGTAGATATCCTCTGTATAATGTTGGCAGGGAGAAAGATTTGGGGAAAACAGTGTTACTCTTCTGTGTAACGGAAGATAACTAATCACTTTCTTGAGTCTCTAAGATGTTGGTGGTACTAATGGGCTGTTCACAGTTTTGAGCCTTTCTTGCCTTTTAATAGTAAATATAGAGATGTTCAGTGTCTTGTAACATGCATGTGATCACAGATTAGTTATTGTTCTGAACCCTTTTGGACAAAAAGACAATTACATGAGAGTCTATGATCTGGAAGGATGGAAGTCATTGACACATGCGTGTTTTTCCAGGCCTCTGTTCCCAGTGGGTCAGTAATTTTTTGGCAATATATATATTGGAGAAGCAGTAAAGAGTTATTGCAACTTCTGTGTTATAAAATGTTCTGTAACGTGAATGATTTGGTTGTGGAAATTTTTATGTAGGAATATACATGCAAGTGTGTGTATGTAAGTTGGCTAAAAAATAAGTAGAATAGTACATATTTATTATCAGAAATGATATCAGTGTTGATTATCCACAACTAAAAAAGGAAATATGTTACATATTTTTTTCTTAGTGGTCAGGGTAGTATTGAGCCTACACAAGAAGCTAATATGAATATATATTTCACAAAAGTCCATTATCTTTATAAGGATGTTAAACCAAAATATACGAAACATGAGATCAACTCTGCATTCAGGAGTATCAGTAACTACTAGAAAATGGGATAAATATCATGTGTACATTTATGACTTCTTTTCAACTCTTTTTATTCTCTTCTGTTGCAATACAAAACACTTACCTAGGTCCTACTCCATTTTAAGACTGACTTGAAAATACTGTAGTCTCCCTGTGTTAAAGCAGAAAATGTAGTGAACCCACACAAAGAAGCATTTACGTCTGGACGCATCCCACAGATGTTTATGACTGCATCTGGTGTTAACATTTTAGTATGTACCTTCCACTGTTAAAAACAATTCTGGTACTGATAATTTTAACTTACTACAATTGTTCACATTAGATATTGTTAACTATGTACCTTTTGGAGGAAATGAAACCAGAAGATGATCTTCAGAAATGCATCCAATACACTAGTACAAAGGTCCACACTGAACTGATCTGAAGTAATATCCTACCCTTCCAAAAGATGTAGTACTATTGATTGGCTTTTAGCAACAACATTGTTACTCAGTAAATCTGTTCCTACCATTCATTTGGGCATAGTCTAGGGGATTATATCATATGTTAAGTAGGATGATCATTATGTTTTCTGTCGTGGGGGAATGCTTGTTTTGGAGCAAGCACAATAATCTGTGGGGATTTTTTGAATTTGTTTTATTGCTGCTTTTTTTTTTTTCTCAGAAGGGCATACATGTGATTTCTGTTGTTTGTCTTAGCTGAGAGGTAATGTGTTACTCTCATGTAAATGTACATATGTACCTAATGTTCTCTATTTCCCTTTCCCTCTCCCTTCTTTTGGTTTAAATCTGCAG
Seq C2 exon
AACCACTAAAAGCCACAATCAGCCCACGGAAAGTAAAAAGCAGTGTTGGTAGTCAAGTGTCCTTGTCCTGCAGTGTGACAGGAACAGAGGACCAAGAGCTCTCATGGTACCGTAATGGTGAAATCATTAACCCCGGTAACAATGTTCGGATCACTGGGATCAACCGGGAGAACCTTATCATGGATGGCATGGCTAAGAGTGATGGTGGAGCATACCAGTGCTTTGTGCGCAAGGACAAGATGTCCGCTCAAGACTATGTTCAAGTAATACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=91.5)
A:
NA
C2:
PF0767911=I-set=WD(100=95.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]