BtaINT0052829 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141712790-141716594:-
Coord C1 exon
chr1:141716304-141716594
Coord A exon
chr1:141712967-141716303
Coord C2 exon
chr1:141712790-141712966
Length
3337 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
CATCATGACCCTGTTTTCAGGTA
3' ss Score
8.86
Exon sequences
Seq C1 exon
AGCCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCTAGCATCAATACCACGCGCGTGCGGCTCAACCTCATCGGCTGGAATGACGGCGGCTGCCCCATCACCTCCTTCACACTGGAGTACAGACCCTTCGGGACCACAGTCTGGACCACAGCCCAGCGAACCTCCCTCTCCAAGTCCTACATCCTGTATGACCTTCAGGAGGCCACGTGGTACGAGCTACAGATGAGGGTGTGCAACAGCGCGGGCTGTGCAGAGAAGCAGACCAACTTCGCCACGCTCAACTACGATGGCA
Seq A exon
GTAAGCTGGCCCTGGCCTCCCGCCTGCATCTCGGGACACGTGCACAAGTTCACTGTCCCTCTCCCATTCGACATCCATCCTCGGCACAATGTGACCCGTGCCCTCAGATCCCCTTAGGCTTGGGGGCCATCCAGTCTGCTCCCCCCAGGACTCCCTAGACCAGGTACCCGTGTGCCCATGGCTGAGTTCCAGGAAGGAGGGACTGAGGCCCGGGGACCCTCACTAGGCAGTCAGGGTGCAGGAGTGACTTCTCTTCGGGCTGAAGGCTTCTCTGCACGTGGTTGGTGCTTGGTCATGACTGTGAGCTAACACTGCTTTTGTTGTCTCCCTCCCTTCTGCCACCCCATCCCAAACCACATAACAGCTTTATTTTTTCTCTCATTTAGCCCTTAAATTGCATGTGCAAAAGCAGTTTTCCATAAGTGAAGATGCTTATGTTAGTCTCTGAGAAGAAACAGAGGTACAGATAGAAATAGAATAATGTCATAGGATGGTAGTGGACATGCACACACATGCACATACATGCACACATGCATAGGCTCACACACGCACAAACATGCAATTTGCAAGGGGTTTCTGAAAACCAGGCAAGGTGTCTCGTGACAATTAGTTGACTGAAAATAAGAGAGAGACATTTTTATCCTTTTTTTTCCTACAACTAGTATTGTGGGCCATTTATTGATGTTGAACAAATGTCAAGCCCAGTGAAGCTAAAGACGGTCTGACATTGATGGTTCTGCAATCAGGGAATTTCAGAGTCCTAACTAGAAGCAAGTTGAGCTGATTTTTGCAGCTTTGCAGTGGTGGCCCACTCTGGGAAAGGCAGTGGTTGAATTAGGTGCTGTGCTTATTTGTAAAAACAGTCTCCACTGGTCAGATAATTTGGAGCTGTGGGCTCAGCTCCCTTGGATCCCCTGTCCAGCGTCTACCCACCAGGCCAGACCACGGTGCTGGGTGACTTACCCAGAAAGTCTGTGCCTGAGCAAACAGCCCGTACTGTATTCTTCACTGGAAAGGCTAAAGGGTGTCCTCTCCTCTGCTTGTGTGCATTCAGGATCTTGCCTTAATTAAAGCCCTGGCAGGAACTTCCTTGAAGTACTGGTTATCCTGTCCTGGGACATGACCAAAGGATGCTCTGAAGGTGATGTGGACTCAGCACCTCCCTGAGCCATTTTCTCCTGGTCAGTCTTGACCGGCCCTGGGCTTGTTCCTCCCACCCTGGCACACTGTAAACCCACCCTGGAATTTCCTGCACAAATTCCTCCTCAGCCACAGCACAGGCTCGCCCCCAGCATTGCAGGCCTGGGTGGGGAGAAGTCAAGAAGGTGCCTATGTGGGAGTCCTGAGGCTGGTGATACCAGCCTGGGCCCCTGCCCTCAAGGCCCCTGATCCAGCTCCCAGATGTGAGGCTTCTCCTCAGAAGCCCTGCTCCTCCTGGGCCACATCACTCTCATCTCCTGGCCTCAATCAGCAGTGACTTCACTCCAAGAGGTTCCATCGCAGAGCATCAGCCACCACAGAGCAGCACGTCTGACCTGCTTTCTCCTCCAACTCTGTTTCATTCTTTGATCTGACAAACTAAAGGGCTTTGATGCTTACCAAACTTTTCCCTAGTGTTTAAAGGCTCCCCAAAGTCCTTTGCTAGCAGGGTACACATTTGAGCAGAAAGTATATTTCTTGCTTTAGATGATGGACATCCAGTAATTGCCTTTCAATCATCCCGCTCTGGCACCCAGCCTGACTGTAATCTGTGTGGTCCAGAGCGCACAGCTTCAAGGTGCGCGTTGGTGATAGGCTTATAGCTAATCATTTAGTTAGCAACCTCTCACATGCAGCATTTGAAACTGTCATTCTTACTTAACAAAGTGCTCTGCAGACTTTAAATGGTTATTTTCTAAAAGAAATGTCCTCACTTTATCCAAGATCTCAGATTAGAATCATGAAAAATGTGCTACATGTAAAATGTTCTGAATCTGAGATGATTTTATTACACTAGAAAGAAAAATGCGTATGTCTATTTTCCTTGAAAAAGGTTACATATTTCTTTGAACCAAGCTTGTGGATATATAGCTTTAATATCTCTTGTGTCACTTCTGCCTGAAGAATTTTTTTTCATTTGGGGCAAAACAAACATTGATGATTAGCTTTCTGGCTGTACTAGTCAGATTTCAGATTCTTCCGTATTTTATTTTGGACTCTGTCTTCTGCCATTCCCTCAGCCAGGTGTTTGTACTGGTCCTGTGTCATCTTGGTTTTGCAGACACATCCTCACCTGCATCCCCTTTTGTGCCTCTTACCTGAGTTCTGAGCATTTGCAGACCTGGGGCTCCAGCCAAAACCAGTGTTTATAAGTTGGAGGAATGATATTATTGGCCTTAGCAGACAGCAGAGGGGCCTGGTGTTCTGTATCCCTGCTCTACTCACTAAATGCAGGACAAAGACACTTTTTGTTCAAAGAGAAATTGTATTATTTTTGCATTATTTTTCCTAAATTACTGACTTCCTGGCCCTTGTTTTACATGGAAAATACTGAAGACTGTAGCATCTTTTCATAGTGGTGGATGCCAAAATGCAAGCTCCATAAAAGGGGATGCCTATGTTTGAATCTCTGGACCGTTTTGTTCAGCCTCTCAGCAGAAGGCAGCTTAAAGCAGCTCAGAGTTCAGACTGCTTAAGTGTTTCCTTGTAATTCTAAATAATCTGAATTTCAGGGCATTATAAGGGTCAATAAACAGCTTGCTTTAGAGACCTGGATGCCTTCTCTTTGAAAAGTTGATTTTGCTCTAATGTCCTGAAATGAGACTTTTAAAAGTAGATTTGGTCTTACATCCATGATAAAAAGCAATGAAATAACCAAAGAAAAGAGATTTTCCGCTCCTTTAAGCAGGTCTATCTGGTACAGTCTCCCCGAAGCCTGCCTTCTGTCCACTTGCCAAATCCATTGTTCCTTCTTTGACGTGCAATGTTTCAAACAGCCACTCTCAATTGTGTTCTGGGTGACACTCAACTCCAGGTAAATGCATGTGACTTTTTAAAGCACCCAGCCTGGATATTATGCTTTCAAGTGTCTGCACCCAGCACGTTACCAGTGAAGTCCCTTTCAAAGAAATGGTCTGTGTCCTTTGCGCAGACTCTAGTTCCATGTTCTGTAGAGTAAGCATAGGAGGGAAGTGAGTGAGTAAAGAAATTAGCAAGGATCTAGATGAAGAGTTCCTTTCATCTTCATCTCCGTGGACGCTCTCGGATCACCCGCGCGGTTTTTATAACCCATCATCCCTAAAAACTCCGCCATGCTGTCGTCATTAACAGCCACCTAACATCATGACCCTGTTTTCAG
Seq C2 exon
GTACAATCCCCCCACTCATTAAGTCAGTTGTCCAAAGCGATGAAGGGCTGACAACCAACGAGGGGCTCAAGATGCTGGTGACCATCTCCTGTATCCTGGTGGGGGTCCTGATGCTGTTTGTGCTCCTGCTGGTGGTTCGGAGGAGGAGGCGTGAGCAGAGGCTGAAGCGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754:ENSBTAT00000006240:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development