GgaINT0111567 @ galGal3
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
NA
Coordinates
chr1:111728437-111734137:-
Coord C1 exon
chr1:111733847-111734137
Coord A exon
chr1:111728614-111733846
Coord C2 exon
chr1:111728437-111728613
Length
5233 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
TGTCATGACACTGTTTCCAGGTA
3' ss Score
7.33
Exon sequences
Seq C1 exon
AGCCACAGTTTTCAAAGGAACAAGAGCTCTTTGCTAGCATCAACACCACGCGAGTGAGGCTGAACCTGATTGGTTGGAATGACGGTGGCTGCCCCATCACTTCTTTCACCCTGGAGTACCGGCCCTTTGGGACAACAGTCTGGACAACTGCTCAGCGAACATCTCTGTCAAAGTCCTACATACTGTATGACCTCCAAGAGGCAACCTGGTATGAATTGCAAATGAGAGTGTGCAACAGTGCTGGCTGTGCAGAGAAACAAGCCAAATTTGCAACGCTCAATTACGATGGCA
Seq A exon
GTAAGTATATCTTTCTAGTTACACGTCTGAGGCTTTGTTTTTATTCTAACTTCTTGTGTGATGTTTTTCCTTACGTCTTCCTGTCTGTTAATCCTTTTTAAATCTGTTTAGCCATGCTGACAGGGGAGTGACAGTCTCAAAGATGTAAAATGCTTATAGATTTTATGACAATAGGCTGACAGACAGAAAAGAGGGATTGTTTATTTGTCTTTGCTGAGAAAATGCTCCAGCACCAAAGTCAGTTGACCATGAGACATGTAACCATAAGACTGCAGGTGTCATTAGTTCCAGTGCTCACAGAGGCATGTATTTCATGCATCTGTCCCTTGAAGTTTTTGTTTTCCACACAGTTAGTTCCTACAGCCATTCACTCTGGCATTGCTATTCCATACAGTGTCCTTGTGACACAACTCAAAACCTATTATGTGACACAACGGAGTGGCTAACTAGCTTGTCTTCCAGGAAAAGCCTCCAGACAACATCCTCCAAGGGCAAAGCAATGGCGATGCTATTATCCCTATTTACAGACAAGGGAGAGTGAAGCTAATGGCTGTGACAGATGGCTGTGTCATGCCCAGCAGTTGGGCACAGGGGGTGAAGGAACTGTTGCATCCTGCCTTTCTGCCAGGGGCTACTGCCCACCCCTGCAAAGCTAGAATGAGAAACCCTCCAATTTGTCAGTCACTCCAGCTCCAGCTCATATCCTGGCATATTTACTGGAAATGATGGTGGCACATGTGTGCTTCTGCTGACTCTATAGTAAGGAATGGCAGTATTTCTGGCAAAGATGCTGTACAGATGGCTCCAGATGGCAATCTCCTGAATTGCTTTAGTGTGAATTGCCAGAGCTTTTCTGGAACGTCCAATATAATACATTGCTGCATTGCCAGGGATATTGTGCTGCACTGTGCAATCACTTGGCTACATCTGTACTGTTAAATTAAACAGGACTAGTAAGCAAGTTCAAACAAGAGCTGGTAGTTGTCCAGCTACAGCACCCCATTTCTGACCATTCATAAATCTGTAGTATTAACTTGTCTCTGGTCACAGTTCTGGCCCGCACTGAGCAGCCCTGTCTGGGACAATAACCTGGTACAGCTCTGGGAAGAATGAGCATTAGGGTCCATTCCCAGACAGAAGCAGCACACAGGGGATGAAAGATTTGTCATATCCTGCCTTTCTGCCAGGGGTTACTGCCCATCTCTGCAAAAGCCAGAGGAAGACGGCAAAAGCAAACACATCCATTTGCCACTCACTCCACCTCTGGCTGCGAAACAGGCAGGGCTTAAATCTCTGCCTCTTACACATCCTATAACGCTACCACAACCATTGCAGCAGCAACAGGGTCCTCACACTATTTCAGAGAAAGAATAATTTTGTCTCAGCACTGAAGGCCTGCAAGTAATGAAGGTCCAAGTACTTCTTGTACAAATGCTAATAGATCTTTCCAGGTAGACATAGGACCTGTTTTATTAAGTGGTAAAGATGCTGTCAATAATAACTCATTCAAATATTATGGGCTAACTTCTTTCCATTTTACTAAGCTTACCCTCTGTCCTTTCCAGTATTTTTATACCAGTGACATCCAACTTTCAGGGATATATATATATATGTATTTTTTCTTTCCACAATAATTGTCATATATATATCTGTCTGGGGCAGTCTTAAGCCATAACTAAAAAATGGAATAATCTGCAAATGCAGGTCAGGAATATTAAACTTCTACTGAAAGCAGTGAAATCAAACTTTCCTTGAAGTGCATTGATCTGAAATGTTGTCAGACTCTCCTTTTTTCTTAGGTGATGATACAAAATTTGGTTTCATCCAAACCATTGCAGGTTTTATCGTGACCTGCATCCTATTTAATCTTGTGTTACTGTATGGCATCCTTAAAAGTGAGAAAATGAAACAATAAAAATGGTTGCAGCATTGAATTTCCTGGGCCACTGCTTTTGGTCAGCTTGAAAATCTCTTATTTATGGCATCGATGGTTTTGTTTGTCAAGCATAACTTGTCAAGACTATATTGTTCCGTAGAGAGGCAGTATGATTTCAAATAATGACCACAAGGTTGAGAGGGGAAAACATGAGTGGAAAAGCAAATTTCAGTTTCCAAGCATTCTGAATTTGTTAGGTTTGATGCAGAACTGAAATGATAAGTTCATTCATATTACCATCTTATTATGTGTATTCCCACATAAAGAATTTTATGGAAGAGCTATTTCAGTGCTTCTAAAATAAAAGATATCTCTACAGAGTCCCAGCTTCCTATTCATTCATTCTTGATACACTGTGTAGGCTTAAAGGAGCTTCAAAGCTGGAAAATAGTGTCTGATTAGAAATAAACATTTTCTGCCAGTAATTCCTGCAGAATCTTTTTGTTTTCATAGAGTGAACTTTTCTTTCACAAAAAAAAAACCCACAAGTGGAAACTTTTTGTCCAGTACTTTTGAGTGCCAACCTTACCTCTACCACTGATTTCTCTTGTGATGTGAGATTAGCCCCTTCCAGCTTCTAGGGGTCACCGTTGAAGCAGATAGGAGAATAGGTCTTTGAAGATTAGATAATGCTCCTATGCATGTTTGAGGGTACAAAATGCTAAGAACAAGTCAGGAACATTAGCAGTCTCAGGTAAAGCCTTCACAAACTTTGTAGAAATCCTTGAATTATGTCCTCTTTCAGTCAATTTGTTTGAACTGCAGTAGCTGGCTATTATCTGCACTAGAGCTCCTGAGAAATATCGTGGCTATGTATTGTTAACCTGAAATCTCTTCATGGAGAACTGGGTCAAGAGGTTAATGACAGATCTATGTGCAGATCTTTGCTTTCTGTTCATAGACATTTCAGCTAACCACTTTCAGCTTGAAGAATATTGCGACCTCCTTGCCCTTTGTTTTTCAGAACATTTGCACTCAACACTTAAGGAGATATTTTTAGCACTGTGCAGCTGTAGTATATAGCACTGCAAAGAAGCTTCCTGACTCAGAGATCAGCTACTCAGTAGCCTGACATTAAATCAGATCAGCTTGGTAGCTGCTCTAAGCTATGTTAATTGATTCTCACTCACCAGGGGACTTCCTAGTGTGAAGAACAGTTAGGACACTGGAAAACCCATGACTGATCTAAAGTCATAAGAAGCAATGGGAGTAAATTGGGTCAGAAACATTCATATTTCAACTCCTATGAACCACCAGTTGAGTAGGCTTACAAAGGATGATGATGAATTGACCTGAAATTAAAAATAAATGCATAAATGAATGAATGAATAAACAAACAAATAAATAATCCCAATTTGTTGGGGAATTTGTTCTGGGATAACCTTTCACTTTTCTACTCTAACCCGTAACGTAGGATGACAGACAACAAATACTGATATGGTGCTTTCTCAGTAGAGAGCAGTTTTAGGTTATGGTAATTCTTATTTCAAATGCTGTTCATCTGCACATGGATAATGTGAAGGACACATAAACTACCAGTTTGTTCTTTTAATGAAGCTTGTAAGTAGAGGTGCAAGGTTTACACTTCACTTAGAAGAGCTATGCAAAATGATGTTCACTTCCCTAAACACTTAAGGTTTAGCTGAAATTGAGTCCACTTCATTGAATCAAAGCGTTAGGAAGATCAAGACATAATTTTAGTAATACTGAACCCAGCAGTCTTTAGCCAATTGTCTGTGTGACTCTAATTCAGTGTAGAATTTGGCCCTTTATTATTCAAGGGGATTTAGAGAAAGTTATTACTATTTCCTTCAGGAGTTCATAGTTCCTTTATTTCTCCATCTAATCACTTGCTTTGCTTTTAGAGCAGTGCAAAAAGGTTAAGACAAGAAGAAAAAGTCCTACTGTGTGTTTATTCAAAGCCATGGAAAATTAGAAAAATATTCAAATTATAACTGTAAGAAAATATTTTCTTCGGAAGTACCTGATACAGCTTTGGATTGTTGTAGCTTTTCTGTTTATCTCCATCCCTTGAGGGAACTACTCTTCTCATTATATGCAACTCAAATAGCTCTTATTAAAAACAAAATAAAACAAACAAAAAAAGCCATGCAAAACAATTCATATTTCCATTGTGGTTATGGCACTCTCATTGTACCGCTTTTTATCTTTTTTTCTTTTTTTCTTTATTTTTCTTTTTCTTTCTTTTTTTTTTTTTTTGGTACTGTATGGTTCATAATGGGATATAGCTATATCACACAATACAGCAATTAAAATGTAAAAAAGGATGTGTCTGTTCTTCTATCTCACTTTCCTATCATTTTAGGAAGTGAGTAGCCAATTTTATGTTTCAGTAGCTGGTTAAAATTTAATAGCTTCCATTGACAGTCATCGACAGTTCACAATACTTGCGTATTTCTATCCATTTCAAAGAAATCTGTGTTTTATAGCCTCATTTGTAGTTGTATGCAGCAGTTTAATAGTAATCAGGAAATGGGCGAGAAGCCTTCCATGACTAAACAGCCTTCCAAAGAAAGTGCTGTATTCTTCTCACGTCCTTTAGAAATAAAGAAAAAAATAGGAAAGTTTGGGTATTACATATCACCAGGAAGCCAGGTATATTCAAAATGCAAATATATCCCAATACGAAAAAGTGAGCTGCCTGCCAATGGGAGTACTTCATAGATTCATTTCCCTCATTTTACTCTCAAAATTTGCACATTTCTATCCAGTTTTGGTCTTCTGTTTTATTGATGAGTATAATGTCAGATACTCTGTAGTAAGTTAGCATCAGATCGGCCATCTGAATCTAAGATCAATAGCACTGCTGAAACCCTAAGATGTGATAAAGGAATGTTTCTGGGTAGAGGATTCATGTGATGTCTTTAGCACAAAGTGTGTGTTGTTGTAGATGTCCGTTACAAAAGAAAGCCAAGCAGAGAGCATAAATCTGTTACAGCAGTGCTATTTTTCCATTTTAAGAAGTAATATAGGCAGGTACCAATTCTGAGATCTCTTACAACTTTGTAGTGATATAATATTACTTAAAAATTAATTGCACCATTGCAACAGACATGGACTTCTGATAATCAAACTCTGCAATCAGTGGCACACATACCTGCAAGGCTTATTATGCGTGCATGGCCATTACACATACAAGCATAGCATCCATCTTGAATATGATAAATCCTTCTTAATGTTTTGCATGTGGTGAAAGCATATAGCATGCTATATTTCCTGAGAACTCAATATTTCGTCTTCATTAATAAGCATCTAATGTCATGACACTGTTTCCAG
Seq C2 exon
GTACAATCCCTCCACTTATTAAGTCAGTTGTGCAAAGTGAGGAGGGGCTGACAACCAACGAAGGGCTAAAGATGCTGGTGACCATTTCCTGTATCTTGGTTGGGGTCTTACTGCTTTTTGTGATGCTGCTGATTGTGCGGAGAAGAAGGAGGGAGCAGAGGCTGAAGAGGCTGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]