RnoINT0051325 @ rn6
Intron Retention
Gene
ENSRNOG00000027992 | Dscam
Description
DS cell adhesion molecule [Source:RGD Symbol;Acc:619992]
Coordinates
chr11:37053049-37056355:-
Coord C1 exon
chr11:37056065-37056355
Coord A exon
chr11:37053226-37056064
Coord C2 exon
chr11:37053049-37053225
Length
2839 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGC
5' ss Score
5.06
3' ss Seq
CATCGTGGCCCTGCTTTCAGGTA
3' ss Score
9.19
Exon sequences
Seq C1 exon
AACCCCAGTTCTCCAAGGAGCAGGAGCTCTTCGCCAGCATCAATACCACCCGAGTGAGGCTGAATCTGATTGGCTGGAACGACGGCGGCTGTCCAATCACCTCATTCACTCTTGAGTACAGACCCTTCGGGACCACGGTCTGGACCACAGCTCAGCGGACCTCCCTTTCCAAGTCTTACATTCTGTATGACCTCCAAGAAGCCACATGGTATGAACTGCAGATGCGAGTGTGCAACAGCGCCGGCTGCGCAGAGAAGCAAGCCAACTTTGCCACGCTGAACTACGATGGCA
Seq A exon
GTAAGCTCAAGGCTTTATGGCTTTTCTCTCTGCGGCTCGGGAATTGTACGCATGTATGCTATTCACTCTCCTGTGAGACGCTTGTCATTACCACAGAGTGAGAAGTGCCCCATAACCCATTAGGGTTTGGGCCATTTGATTCCCCGCTCTGCGGGCTTCCTAGTCCATTGTACAGAGATGATTATCACTGTGTAGACGTCTAGAGCGAAGGGACTAAGGGGAACTCCTTGCAGAGCCTTAGTGTAGGAGTGGCTTCTCTCAGGGCTGAAGGACTCTGCCTCATGGTTCAGTTGCTTTGCGGATGACTGTGAGCTAACACTGCTTTTGTTGTCTCCCACCCCTTCCCCATCCATCCCAATCCACACAACTTTCTTTTTGCTCTCATCACACCCTTAAAATGCATGTGCACAACAGTTTTCCATGGCAAAGGAAGTTAGGTTAGACAAAGCAGGGGCATGGAGGGGAATAGAATGGTGGATGGGTCACTATGGGCCTGTGCTCACACTTACGTACATCCTAAAAGCTACAGAGTCTCTTCCTTGACCTTTGTTAAGTTCTGGATACCTGAACAACACCCAGCTCAGTGAAGCTGACGCAGCATCTCTTACAATCAGTCGATGGATCTTGCTTTGTAGCATATCCATGCTGGTTCCTGTAGCCCTAAAGACAACCATAGGCTCTGAGTTCTGAGCACCAACGGTGACTCATCAGGCTGTTTGGAGCTGTGGACAAGTTCCTCTCTCAGCCTTTTGTCCATTCCCCACTGCTCCGAAGGAACTATGCTCCCAAGTAGACTCCGAGTTGTGCTTTCTCTCTGCATACTGTGCTGATCCTTCTGGCTCCCATCTCTTGCCCACAGTCATTGCTTCTAAAGCCTATCTCAGATAGGATCAGATTCCTCTTGCCTCTGCAGCCAAGTTCTAAGCTTCCAGAAGGACCTCTAAGAGAAGTCCTTGTGGTGTCGGGCTCTACCCAATGGGCTGTTGTACAGCCCTGGCTCCTTGAACAGCTGCCTCTCCCCTTCAAGGACCCAGGCCCCCTCTTACACAGCCTCTCTCTGTTTTGTGTGTATGACTTTATCTAGAGAAGTCTTTGTCCTAGGGAGCACGCACAAGCAGAGCGTCTAAGGCTTTCCCACAATGGTGCCTAATTGTCTGTTCTTACAAAATGAAGTTCTAAGACCATGGCTTCTACAAAGTGCATTTAAATGCTTCACCCAAGCCCCCTAGAAGCACATGCCCAGTTAGTACACATATCCCTTTGGACACCCACACTCTGGCCCAAGGCCTGTACAGGTGGATGCCAGAGAGCTTGCCACACATGGGCGGCATGTTGACACCTGTTCATGTCCCAAATACGTTTTCAGACTTTAAATGTTCAGCTTCTGAGACATTGACAATGTTTTCTCATTCACTCAGAACCAAATTAGAAAGGTATGTGTGTGAGGGGCAGTCTCTTCCCTAAAATCTGAAATAATTTCATGGCACGAAGATCTAAGAGTATATACTTTTATATATTATCTTGGAAAAGGGAGATATATCTAAAAGATAGCATGGCTATATACCTTTAGTATCTCTTCGGCTATACTCACTTGTTCTCACAATAAGAAAAACAAACGTTGAAACAAAATCACCCTGATATTCACATCACTTAGATTCCCATCTCTCCTACCTCTTTATCTGAGTCACCCCTATTTCCTTCACCAAAATTTTCTGTGTGTCCTTATGGCACCCTGTTCACAGACCAGCCTCAGTCACCAATTCTGTGACTCTTTCTTGGAGTCTGGATATTTGTAGGCTTGGGTTTGCTGCCAGAGGTGCTGTGATATTAAAAGAAGATTCTGCTCGGCTCCAGCAGACGTCAGAGAGGGCCAGGGGTTGCATTTTCACGGCTCCAGCTACTAAATAAGATCCTTTTGCTTTTTCTCTTGGGAAAATGGCATATATATATATATATATATATATATATATATATATATATGCGCATTAGTTTTCCTAAAGCCCTGGCTTTCTGGTTTGCATAGAAAAGACAGTGGGAATGGACGGAACATCTTATGTAATGGCTGATGGTAAGATGCGTGCCCCACAAATCACAGATGTCTGCACCCTCATGTTCAGCCTCAGGGTGGAAAGCATCTTAACAGCTCAAGAGTTCAGTCGACTTCTATTTTTCTTCTTACCGCTCCAAATAATCTAAGTTTTGTAGAGCAGGGTAAATGAGGCCCTGTCAGGAACTCTGCTGTTTAGTGACCTAGATAGACCCTTCCCCTTGAAAAGTTGCCCTTTGCTCTTCTACCCTAAACTGGGAATTTTAAAAGCATCTGTGAAATTGGGGTTGAAGTCAAGGGAATAATCAAAAGGAAATAAAAAGGGTCTGTGCTTCTTTAGGCTGAGGTACCTTACATCCTCCCGGAAGGGAGTCTTCTGTCCAGTTGACAAACCTATTGTTCTTCCCTTCATATGCAGTTTTCAAAAGCACCATGGTTAACAGCCAAGTGGGCATTGGAGTTCAGGTGAATTAAGGTGGCTTTTGTGAGCCCTGAGTGCAGGCACCATACTGTCAGAGGGTAGCGTCCTAGAGTGCACTGCCAAAACAAACAAACAAACAAACAAAAAACAAACCGCAGTCCTTTACAAAGCTGTGCCAGGGTGAGTTGGAAGTTTGGGGGAAGGGAGAGTGAGCAAGTCAACCCAGAGAGTCAGGGAGCTGGTCCTCTCATTTCTCATCACACAGACACCCCTGGATCACACCGCGCGGTCTCTCTGTAACCCATCATCCCTAAAAACTCCACCACGCTGCCGCCATTAATAGCCATCTAACATCGTGGCCCTGCTTTCAG
Seq C2 exon
GTACAATCCCTCCACTCATTAAGTCAGTTGTCCAAAGCGAAGAAGGGCTGACAACCAACGAAGGGCTCAAGATCCTCGTGACCATCTCCTGCATCCTGGTCGGGGTTCTGCTGCTCTTTGTGCTTCTGCTGGTGGTGCGAAGGAGACGGAGGGAGCAGAGGCTGAAGAGGCTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027992:ENSRNOT00000002215:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=82.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]