BtaINT0052844 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28573702-28574543:-
Coord C1 exon
chr15:28574447-28574543
Coord A exon
chr15:28573831-28574446
Coord C2 exon
chr15:28573702-28573830
Length
616 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTTCCCTTGCCACTCCCCAGAGC
3' ss Score
8.02
Exon sequences
Seq C1 exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCATATGGGGAGGACCGGGGCCTGATCCAGCTCACGGTACAAG
Seq A exon
GTACCTCACCTGCTCCACGTCCCCAGCCCCTTCCTCTGGGCCCTGGTGCTCACTGCCAACTCCCCTCAAGAGTGGGGGACACTCCACACCCAGGGGCAGTGACAGGAAACAGCTCTGGGGAAAAGCCTCAGTCCACTCTCCCTCCTGCCCAGAGTGGTGCCATAGGGTCCTTCCAGGACACTGCAGACAGTGAGGTCTGTGATGGCAGAAGGCCCTGTGGAGCACACTGTTGCCCCCAGAAGTGGGAGACCTGGATTTGTGGGCCCAGACCTTGGGGGAGGTGTGCGGAGGGAAAGTCAAGATGGAAAACCTGGGAGCTCTGCATGGTGGGAAGCAGGCCATCAGCTGTGAGGGGTCCCTCCAAAAGGGGCTGAGGAAGAGAGGGGAACAGAGCAGGGACCCAGCACGCCCACTTCTGCCTCTGAGCCTTTAGATCTAAGTTTCTCCTCCATCCCTATGCTGCCTTGCCCAAACTCCAGGGCTCAGGACCCTCAGATAGACCGTTGTGTCTCCAATCCTCCCAGCACAGATCCCTTGATCTCTGCAGAGGGTTGGCAGGAGGCTAAGCTCTCTGCTGCCATCCTCACCCCTGCCCCCTTCCCTTGCCACTCCCCAG
Seq C2 exon
AGCCCCCTGACCCCCCAGAGCTGGAAATCCGAGAGGTGAAGGCCCGGAGCATGAACCTGCGCTGGACCCAGAGATTCGATGGGAACAGCATCATCACGGGCTTTGACATTGAGTACAAGAACAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(31.2=90.9)
A:
NA
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCCCGCTGACCGT
R:
TTTGTTCTTGTACTCAATGTCAAAGC
Band lengths:
222-838
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development