HsaINT0052350 @ hg38
Intron Retention
Gene
ENSG00000177103 | DSCAML1
Description
DS cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr11:117480443-117481270:-
Coord C1 exon
chr11:117481174-117481270
Coord A exon
chr11:117480572-117481173
Coord C2 exon
chr11:117480443-117480571
Length
602 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CCTCCACTGCCGCACCCTAGAGC
3' ss Score
6.56
Exon sequences
Seq C1 exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCGTATGGGGAGGACCGGGGCTTGATCCAACTCACTGTGCAAG
Seq A exon
GTACCTTCACCTGCCCCACCCTTCCCATCCCACCTCCCCAGGGCCCAGGGGCCCACCGCTAACTCCACCTCAAAGAGCAGGGGCCACAGCCTACGCCATGGTGGAGGATGACAGGAAACTGCCTTCTGGGGAAAAGCCTCCCTCCACCTGCCCTCCTGCCCAGAGTAGGGAAATAAGACCTTTCCAGGAACTTAAACAGCAAAAGTTTGCAATGGCTACAGCCGCTATAGATTCCACTGACCCTTCTGGGGAGGGGTGGGGGAGTCAGGTTCCTGGGTCCAGGCCCCTGCAGCAGGTGTGGGAAGGGAAAGTCAAGCTGGGGAAGTTGGAAGGGGAAAAATGCCGTCAGCTAACAGGAATCCCTGCAGAAGAGTCAGCCCTCTCCCAGGCCAAGAACAAGATGGCAGCAAGACAGGAGAGCAAGCCAGGCCTCCTCAGCCTCCAAGCCTGGCTGCTGGCCTCCTCCAGCCCCCACCCTGCTCAAACCCTAGGGTGCCAGAGTCCTTGGCTAGACCCAGGTGATGCCAATCCTCAGGGCCAAGCAGGAGGCCAAGCTCCCTGCTGCCCTCCTCACTTCCCTCCCCTCCACTGCCGCACCCTAG
Seq C2 exon
AGCCCCCCGACCCCCCAGAGCTGGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCGCTGGACCCAGCGATTCGACGGGAACAGCATCATCACGGGCTTCGACATTGAATACAAGAACAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103:ENST00000321322:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(31.2=90.9)
A:
NA
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGCCCGCTGACCGT
R:
TTTGTTCTTGTATTCAATGTCGAAGC
Band lengths:
222-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development