GgaINT0138367 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5325132-5325470:-
Coord C1 exon
chr24:5325374-5325470
Coord A exon
chr24:5325261-5325373
Coord C2 exon
chr24:5325132-5325260
Length
113 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ACCACCTCCATCCCCCCCAGAGC
3' ss Score
9.64
Exon sequences
Seq C1 exon
CTGAAACCCGCTGACCGTGGCGACTCAGTCTTCTTCTCCTGCCATGCCATCAATTCGTACGGCGAGGACAGGGGCCTGATCCAGCTCACTGTGCAAG
Seq A exon
GTACTGAGCTCACAGCACCATGACCTTGGGTGTGAGAGCAGGCAGAGCCTCACCTCAAGGTCCTGCTGCTCCACCTGTCGCCCCACGCTCCTAACCACCTCCATCCCCCCCAG
Seq C2 exon
AGCCACCTGACCCCCCAGAACTGGAGATCCGCGAGGTGAAAGCCCGCAGCATGAACCTGCGCTGGACGCAGCGCTTTGATGGGAACAGCATCATCACCGGCTTTGACATCGAGTACAAGAACAAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.295
Domain overlap (PFAM):
C1:
PF0767911=I-set=PD(31.2=90.9)
A:
NA
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAACCCGCTGACCGTG
R:
CAGACTTGTTCTTGTACTCGATGTCA
Band lengths:
226-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]