BtaINT0052865 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28608645-28610897:-
Coord C1 exon
chr15:28610601-28610897
Coord A exon
chr15:28608918-28610600
Coord C2 exon
chr15:28608645-28608917
Length
1683 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
3' ss Seq
CCCTCCCGACTCCTGCCCAGGCC
3' ss Score
5.31
Exon sequences
Seq C1 exon
ATGGCACTCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCAACCCTGGGGAGCAGTTCTCACTGATGTGCGCGGCCAAGGGTGCCCCACCCCCCACCATCACCTGGGCCCTGGACGACGAGCCCATCGTGAGGGACGGGAGCCACCGCACCAACCAGTACACCATGTCCGATGGCACCACCATCAGCCACATGAACGTCACGGGGCCCCAGATCCGTGACGGGGGCGTGTACCGGTGTACGGCACGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAG
Seq A exon
GTGCCTGTCTACATTTAAATATCAGAATAGGCTTTTAAGTTCCTTTGCCATCTCTGTGGTTACCATTATTCTTGTGGTGATTAGTACTTATTATTAATCGTCATTTTGATTTTAGTAGAGGTCTCTCTCCTGTCCCCCTCTCCCTGCCCCCTGCAAATCCCATCATCCATTCTTGTGTGTGTGTGTGTGTGTCTGGTACAGTTCACCCTCTTTGCATTCCCATTCTCCTCCTCCCTGCACCCCTCCCACAATCCTGCCCCCTACCCCGTCCCTCCCCATCAATCTCTCTGGCTCCAGGTACATTGAGCACTCCACTGGCATCTGCGTCCCACCCAGGCCTTGCAAGGACAGGCACAGGGCAGGGGGCAGTGGTCCAGGCATGCCCTTTGGTAGAGATGTCCACCAAAGCTTTATCCCCATGTGCCCCCACAGAGCCACCCCTGAGATGCTCCAGGAGCTGTGAGCAGCCAGGAGCCAGGGAACCATCTTCTCTCAATCCACCATCTCCTGGCTAGCCTCTAAGACCCCAGCCATGAAGACTAGGGGGTTCTGGCTGGGTGAGGGTGCCCCAAGGCAGGCACCTCCATGAGTGGAGGAAGGAGTCCTCATAGTGACCTTCCCCATGCCTCAGGTCTCCAACTTGCTTTGGTGAGAATAGAGGCTCCTCTGAAGCACTCTGTAGCCAAGTGGGGTCAGACTAGTCCTCATCTGACCCTACCAGTGAGCCCTGACCCAAGAGCAGAAGAGGCTCAGGGGAGTGGGAGGGCCCTGGTCCGGGGCCGCTGGTGGCTGCCATGGAAACAGGGAAGGGGAGAGGCGAGGTCATGCTGAATTCATCTGTGCCAGGTCTCTGACCCCCACATGAGAAACGTGGTCTCCCTTTGACCACCCTCCTGCCCTCTCTGAATTGGAAGAGGACAGAGCTGCCCAGTCATGGGAGATGCCTTGGCCCAGCCCCTCATCTGCTGGGTGAGGGGGGAGCTGGAAGCCCAGAGTTTCATATACCTGCTCCAGCACTAACCCTGCTTGGTAGCCTCTGAGCCTCCTTTGCAATTCCCATGTAACCATCTGCCCACTAACGCAGCCTACGACCCTCCCCACTTCCGCCAGGGTAATCAGAGCCCCTCTTTGTAGCCCCTTCCCAGGGGCGCAGAGAACACATTTATTGTTGAAAGAAGAGCATCCAAGGAAGACCTTCCTATTGTCCTTTAAGTAGTTAATATACGTGAGATCGTTTTTGGTCTAAGACCATTGTGAGCAAATCGAATGAAAGTAACAGCATCTCGACATTTCCATTTTAACCCCCAGATCTTAATCTCCTCCTAAATGAGGACTTACCCTCCCAGATCCCCATCACTTCTTGGTGAGGCATCGGTTTGCTCATCTAGCCCATCCCAGTAGGGGAATGGATTCTCGCCCCAGGGCATGAATGAACCGTCTCTGTTTGCAACTGTTTGAAGCTAGTAACAGTGAATCCTGGAGAGACCCCGGGTGCCCCCAGTTCCAGCCTCTGCTTCGTAAAAAAAAAAAAAAAAGGTCTCCCTTTCCCCCTGCCGAATTTCCATCCCCTAAGAGTTTCTGAGGCCAAACGACTGAGAAGAGCATCCCAGGGCGACGCCTGGCTGTCCCTGGCTAACCGCACCATCACCCATCCTCTCCTCCTCCCTCCCGACTCCTGCCCAG
Seq C2 exon
GCCCCCCCAGCATCCGGGCGATGAGGAACATCACGGCCGTGGCTGGGCGGGACACCCTTGTCAACTGCAGGGTCATCGGCTACCCCTACTACTCCATCAAGTGGTATAAAGACGCCCTCCTGCTGCCCGACAACCACCGGCAGGTGGTGTTCGAGAACGGGACCCTCAAGCTGACGGATGTGCAGAAGGGCATGGACGAGGGAGAGTACCTGTGCAGTGTCCTCATCCAGCCGCAGCTCTCCATCAGCCAGAGCGTCCACGTGGCCGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCAGTACACCATGTCCG
R:
CACAGGTACTCTCCCTCGTCC
Band lengths:
358-2041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development