GgaINT0138361 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5334279-5336509:-
Coord C1 exon
chr24:5336213-5336509
Coord A exon
chr24:5334552-5336212
Coord C2 exon
chr24:5334279-5334551
Length
1661 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
3' ss Seq
CCTTCCTCCCCACTATGTAGGTC
3' ss Score
8.91
Exon sequences
Seq C1 exon
ATGGGACCCCCCGCATCGTCTCCTCCTTCAGCGAGAAGGTGGTGAACCCCGGGGAGCAGTTCTCCCTGATGTGTGCCGCCAAGGGCGCGCCGCCCCCGACCGTGACCTGGGCCCTGGACGACGAGCCCATCCCGCGGGACAACGGGCACCGAACCAACCAGTACACCATGTCGGACGGCACCACGGTGAGCCACATGAACGTCACCAGCCCGCAGATCAAGGACGGCGGCGTGTACCGGTGCACCGCGCGGAACTCGGTGGGCAGCGCCGAATACCAAGCGCGAATAAACGTAAGAG
Seq A exon
GTGCCTGTCTACTTTTAAATATCAGAATAGGGCTTTTACTGGGCTTTTGGTTGTGTTCTGTTCTTCCTCGCCCCTGCCCTTTCCCAGCCGTGCAGGTCCCTCAATGCCTGACCCCCCTGCAGCCCTGCTGGCCCCCAGATCCATGGGATGGATCTTCCCCATGGCGCAGAGCAGGGCCCTGAACTGAGCGCGCATCCAGAGCAACACTTCCCAGAGGGGCAATGCCTCCCTGTTGGGCTCTGCTTTCACCCTACCCAGCGTTGGGTCTGTGCAGCAAACACCTCCGTGAAGGACCTACTGGTGGCACAGAAGTGACTTGTCCTGCCCATTCCTCTGCACCCACCAGCGATGTGTCCCCAAACCACCCCAGGACCCCAACTCGCCCCATCCAGCCTCGATCCCATTACAAGCAATGATGAGGCAGCACGGGGAACGATGGAAAAGGAGCTTGGATGTGTCGTGTCTGTGTTTTCTTTGTCTGCTAAAAGCCACAGCTGCGTGAATCACTGCGTTGTCACACTGGAGTGCATTGTTCTGTGCATTGTAGGGCGTTCTGCGGGGCACGGGGTGTGGTGTGAGCCCCTGCCCATTCATTATCACCAGTAAAACTTCTAGGCTCGTAGGTGGGAACAGAGTCAAGGTAACATTAATTTATCTGCTAGAAAGAGACTTGAAGAGCTGTGTTTGTCTGCGTCTCAGGTTTGAAATGGATCTAGTGGCTTTTTGGCTGGGATCCCGGGAGAGTCTGAATTTTGCTGCCATTTACTGCTAAATTTGGAGCGAGTTCATGTCCCAGCCACGAGAAGCAATTGCAGCGTTTTGAATGAGGACGTTTCATTGTCTTCTTTTTTTTTTTTTCCTCCCTCTTTTGGTCCCTGACTGCCTGTCACTAGATAAGATTCAGGCTTTTTTTCTTTTGCCTTGGAATTGAGCAAGTCCCTCCAACAGGCCCAGGAGGCAGTTACAGATGCTAATTTATCTCTCCCTCCTCCTTCTTATGGTGCACTGGGGGGAATCCATGCTGCTGTGCCCTCAGACACCTCTCTGCTCCACGGGGACAGAGCATCTCCCACCAAACCTTCCCAACAGCTGATGGGTGCCCCCCACGCTGGGGGCAGCGGGACTTAATGTAAGGAAACACACTAAAGGCAACGTTGGCTTATCTGGAGTGTCTGCTAAGCTGTCGTCCTCACCACTTAGGGTGAGGAGCCAAGATGGAGTTAATCTGCAGATGGGTTTGCTATTTTATACGACAGCCACAAGAACAATATAATTACTGAAGCATGAAACCTCTTGTTATAATACTCACCTGCAGCATGCCTCCAGTCCTCCAGCCAGCGTGAGAGCAGCTGGGAACAGGGGGCGAGCTGGCTTTGGGCAGTACTCAGGCAACCAGTAAGAGGCACGGAATGGGCTGATTTCAGTTGAGAATAAATAAATGTACAAATGGAAGGGAGGTCCCCGTGTGCAGTTCTGCACCAAGGCCATTCGGCAAAGCGGGCAGAGCAGCTGGGGCGGTTGGCAGCGCTCCCCAGGTGTCTCCCAGCAGCCTCTGGTGTCCCTCTGAGGGGCAGCAGCAGCATTTGCAGCGGATCTGTGTGCAAACAAACCGCCCTTCGGAATTAACCTAGCCTGCCTCTTCCTTCCTCCCCACTATGTAG
Seq C2 exon
GTCCCCCGAGCATCCGGGCGATGAAGAACATAACGGCGGTCGCGGGTAGGGACACTTTCATCAACTGCAGGGTGATTGGGTACCCGTATTACTCCATCAAGTGGTACAAGGACTCTTTGCTGCTGCCCGATAACCACCGCCAAGTGGTCTTTGAGAACGGGACCCTGAAGCTGATGGACGTCCAGAAAGGCATGGATGAAGGGGAGTACCTGTGCAGCGTGCTGATCCAGCCCCAGCTCTCCATCAGCCAGAGTGTCCATGTCACGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGAACCAACCAGTACACC
R:
GCCTTTCTGGACGTCCATCAG
Band lengths:
342-2003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]