RnoINT0051365 @ rn6
Intron Retention
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:49976208-49978590:+
Coord C1 exon
chr8:49976208-49976504
Coord A exon
chr8:49976505-49978317
Coord C2 exon
chr8:49978318-49978590
Length
1813 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCT
5' ss Score
4.01
3' ss Seq
TTTCCCCCCACACTCCCCAGGAC
3' ss Score
10.24
Exon sequences
Seq C1 exon
ACGGCACGCCCCGCATCGTCTCATCCTTCAGCGAGAAGGTGGTCAACCCCGGGGAGCAGTTCTCATTGATGTGTGCCGCCAAGGGCGCCCCGCCCCCCACGGTCACCTGGGCCCTGGACGACGAGCCTGTCGTGCGGGATGGAAGCCACCGCACCAACCAGTACACCATGTCCGACGGCACCACCATCAGCCACATGAACGTCACGGGTCCCCAGATCCGGGATGGGGGCGTGTACCGGTGCACAGCGCGGAACTCGGTGGGCAGTGCTGAATATCAGGCGCGAATAAACGTAAGAG
Seq A exon
GTGCCTGTCCACATTTAAATATCAGAATAGGCTTTTGATTTCCTTTGCCATCTTTGTGGTCACCATCATTCTTGTGTGCTTCTTAGTAACTGTCATTTTGATTTTAGTGGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCATGGACTCTTAGGCTAACTTTTCCCCTAGAACTAAGGCTTAACAATGATATTTATTTACTTTAACAGTATCTTAAGTAGCCCAAGCTTGCTCAAGCTTCCTGTGTAGCTGAGCCTGCACCTGAACTCGCAATCTGCTGGTACAGTCCACCCCATTTTCCTTCCCCCCTCCTCTTCCCTCCCACAATCTGGCCTGCACATCCGCCTGACCCCATCCGCCCCATCAAATCACTCTGGGCCCCTCGTGCTCTATGCACCTGCTAGCATCTGCCAGCCCCCCAGCAGGGTCTTGAAAGGACAAAGACAGAAGTAGGGCATGCTCAGCCTTAATACCAGTGAGTTCCCAGCATCCTCCACTGAGCCAACCCCAAAATGTCCCTAAAAATGTCCTAGCCAGGGGCCCTGAAATCATGTTCTCACTACAAGGCTCAAGCTTCAGGAGTGAGAGATTGAAACTGAGCCTCCCAGTTGGGTCATCTCCGGAGATAGGCAGCCTGTAGGAATAAGAGAGGGGCCCACAAGGTATTGACCACCCCCTTTCTCAGTTCTCCAAGTTAACAGGGTGAGAGTAGTTCCCCCCGGATGCTCTGCAGCCCTCTGGGTCTGACTGGTCCACTCTGGACCCCATCAGTGACCTCTAACCCAAAGCTAGAGGACACAGAAATGGACACTGGTCCAGGGATACTAACAGTTGCCCTGAGGCAAGGGACAAGGTAGAGGTGGAGATTCAGTCTAAATTCACCTATGCCAGCTCCCCCACGCTATAGGACAAGTCTGGCCAAGCCCCTGTGTCCCTCTCTGAACTGGAGCTATAGGGCCCTGTAGGAAGACTCTAGTTCTCTTCTGTATCTTCTGGATGGGCACCTGAAGCACCAGATTTCCATGATGCTCTCCAGTACTGTCCCTTCATGGTGACCTCTAAGCTTCCTCCTCCCACTCCCATGATGTCCCCTGCCAGCCAGCCCTGCTGAGGATACTCCCAACCCCCAGCCACTATGGTCAGAACCTGTTCTCAGGTACCCACACTACAATTTCCCTGACTGGGAGAAGCAACATGCGGGCTCATATGACCAAGACCTTCCTGGTGCCTTTTGACTAATACATTACTATGTGGGAGGTTCTTGGGGGGGGTGTGAACGCAGTGTGAACAAGGAGAGAAAAAGCATGAGGTCCCTGCTTCCCTGTTGACACCTCAAGCCCAGCTGCTCTCTAAAGGACCCACCTGGCCCAATCTGGTGGTTTCCTGTTGCGGCCATCGATTGGCCTCATCCAGTCCTGTAAGGGACAGGATTCTTGTGAGAGGCCAGTGTGGCTCACACCTGTTTACAACTATCTTACAATAATAACAGTGAGTTCTAGGGGTCCCATTGGTGACCCCAACCCTGGCCCCTGCACTTAGCTGAGAAAGTGCCCCCTACCCTCACCCGGAAAGTCTCTCACCCCAGGGAAAGTCTCAAGGGAGAAGAGCCCCACCACAAAGTGGCACTGGCTCATGACGCCACCTGCCCCTCCTCTCCTCTTTCCCCCCACACTCCCCAG
Seq C2 exon
GACCCCCCAGCATCCGGGCAATGAGGAACATCACGGCAGTCGCCGGGCGGGACACACTCATCAACTGCAGGGTCATCGGCTACCCCTACTACTCTATCAAGTGGTACAAGGATGCCCTGCTGCTACCAGATAACCACCGCCAGGTGGTGTTTGAGAACGGGACCCTCAAGCTGACGGACGTGCAGAAGGGCATGGATGAGGGAGAGTACCTGTGCAGTGTGCTCATCCAGCCGCAGCTTTCCATCAGCCAGAGTGTCCATGTGGCCGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502:ENSRNOT00000022476:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=96.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCAGTACACCATGTCCG
R:
TACTCTCCCTCATCCATGCCC
Band lengths:
352-2165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]