BtaINT0052915 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021923 | DSG2
Description
Bos taurus desmoglein 2 (DSG2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192172]
Coordinates
chr24:25933955-25935367:-
Coord C1 exon
chr24:25935201-25935367
Coord A exon
chr24:25934093-25935200
Coord C2 exon
chr24:25933955-25934092
Length
1108 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TCTTTTTCATTGCCTTGCAGGAA
3' ss Score
11.41
Exon sequences
Seq C1 exon
ATACACTAGTGATGAAAATCAACGCAACCGATGCAGATGAGCCCAACACTCTGAATTCTAAAATTTCCTATAGGATCGTGTCTCAGGAGCCTGCTAATTCTCCAGTGTTTTACCTAAATAAAGATACAGGAGAGATCTATACAACCAGTATTACCTTGGACAGAGAG
Seq A exon
GTAAATTGATATTTCATGTTATTCATCTTTTCTGCTCTCCTCTCCTTCCAGTTTATTCTCTCTCTAGTCTAATTTTCTGACTTTGTCTTGTGTTACTCACTCATAGGATAACTCAGAATGATCCTCCTCTAGGGATGTGCTGTCTAGTATCATAGCCATCAGTCATACGTGGCCATTGGCCACTTGAAATGTGACTAGTCCCAGTTGAGATGTGCTGTAAGTGGAAAATATACACCAGATTGGGAAAACATAATATGAAAAAAAAAAGAATGTTGAAATATCACCTTAATATTTTTGGTTGATCACTTGTTGAATTAATAACATTTCCGATACCATGGGTTAAATGAAATTTCTTTGTTCTTGGGGGGTTAAGTCTTCATGACAACTTTTAACCTAAAATGAAGTGTGGGCTATAAAAAACTAATTTCTAGAGTCTCATCACTTCCAGTGTAATGCTGACTACCTTTTGAAAGCACTTTTGTGCTCAGACTATTTTAAGGAGAGACTCATCTCCTGATAAATATCACCAATGATGTAATTAAGAATTTTGATGTCAACAACTGCTCTAGGCTTTTCTGCCCTTTTTTAAAAAAAAAACTCTGATGGCAAACAAACAGCATCTTCACAGAATTAACAGCAGGTCATGAAACTTTTTTTTAATGTTTACTTATTTATTTTTGGCTGCTCTAGGTTTTGTTGCTGTACCAGCTCTTCTCTAGTTGCAGCGAGCGGAGCTCCTCTCTAGTTGTGGTGCACAGACTGCTCACTGCAGTGGCTTCTCTTGTCGTTTAGCACAAACTGTAGGGCCCTCAGGCTTCAGTAGTTGCAGCTCCTGGGGTCTAGAGCGCAGGCTCAGTAGTTGTGGCGTACAGGCTTACTTGCTCCGAGGTATGTGGGATCATCCCAGATCAGGGATCAAACCTGTGTGTCCGGCATTGGCAGGCAGATTCTTTACCGCTGAGCCACCAGGGAAGCCCCCATGAAACTTACTTATGAATAAAATGTACTGAGGTTCATTCCCCTGATGATAAAGTGAACTCAACCCAGAAAGACAGATTTGGGAGCAATTCATTTTCACCCCAGCGGGATCTTTTTCATTGCCTTGCAG
Seq C2 exon
GAATACAGCAGCTACACTTTGATAGTAGAAGCAAGAGACGGCAATGGACAAATAACAGATAAACCAGTAAAACAAGCTCAAGTTCAGATTCGTATTTTGGACGTCAATGATAATATACCTGTAGTTGACAGAAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021923:ENSBTAT00000029228:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.0=100)
A:
NA
C2:
PF0002812=Cadherin=PD(32.0=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTAGTGATGAAAATCAACGCA
R:
ACAGGTATATTATCATTGACGTCCA
Band lengths:
287-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]