MmuINT0053480 @ mm9
Intron Retention
Gene
ENSMUSG00000044393 | Dsg2
Description
desmoglein 2 [Source:MGI Symbol;Acc:MGI:1196466]
Coordinates
chr18:20739013-20741346:+
Coord C1 exon
chr18:20739013-20739179
Coord A exon
chr18:20739180-20741208
Coord C2 exon
chr18:20741209-20741346
Length
2029 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
ATTTTTTTCTTGTTCTTCAGGAA
3' ss Score
10.99
Exon sequences
Seq C1 exon
ATACACTTGTGATGAAAATCACCGCCACAGATGCAGATGACCCGGAGACTCTGAATGCTAAAGTCTCCTACAGAATTGTCTCTCAGGAGCCTGCAAATAGTCATATGTTCTACCTAAATAAAGACACGGGGGAGATCTATACGACCAGTTTTACTTTGGACAGAGAG
Seq A exon
GTAAGTTAAGGTCACCTGTCACTCTCTTTTCTTAACCCTCTCTAGTTTCTCCACTCCCTCGATTTTTATGTTCTAATTTTAATTTGCTCTGTATTCCTCACTCATGGAATAACTCTAGGAATTATTGTGTAGGGATGTGCTGCCCAATATGGCAGTTACTAGCAACATATGCTATCCAGCTCTTGGAATATGAGCAGTCCAAATTGAGGTATGCTGTGTTCATACTGAGATGGAATTAGCATCAGACTGGGAAAACTTGGTATGAAGACTACAATTTTGCCATATGACTCAGACATGGAGCACAGCATGATAGCACAGGGTGTTAATCCTAGCACTCTCCAGGCAGAGGCTATTGGATCTACAGAGACTGTTGGATCTCCATGAGTTTGAGGCCAGCCTGGCTGCCAAACTAGGAGATCCAGGCCAGCCAAGGCTACATAGTGAGACTTAGCCTCAAAAACAAAAAGGAGAATTAAAAAGTTCATAGAGAAAAGTCTTGTTTTAAATCTTAAAAAAAAAAAAAAGGAATATTGAGGATTTAAGTAGTTTCCTAGAAAGATTATTCTCTCAAACATTTTATTTTGATTTCAAAATTTTTTTAGCTTTATGTATATTGGTGTTTTGCTTGCATATGTGTCTAACACCACATATATACCTGGTGCCTGCAGAAGTCAAAAGAAGGTGTCAGATCCCCTGGGACAGCAGTTATAAGACAGCGGTTAGCTGTTCTGTGGATGCTAGAAACCAAACCTGGGTCCTCTGAGAAAGCTTCCAGTATTCCTAACCATTGAGCCATCTCCTCAACCCCTAATTCTAATGTTTTAATCAAAGGGGAAATAGATAATCTTTAAGAGCCACATGCACAAGAATTTTTATAGCACAGAAAGGTAAAGCGTTGGGGATCCTGAGGATGCTGCAGTGTTATCAGATGCAAATCTTAGGCAGGTGTGTTGTGTCGTGTTTCAGAACCAGCTGCTCACATGGGAAGGACCTCAGCCAACATTCCTATTGAGGTCTTTGTGGCATTTACGAGTATGGCCAATGACTCCTAACTTCTGTGGCATGTCTTTTGCATGAAACTGAAGTGGGAAAGTATTCCTTTGAGCAAGTTGCTGCCTCTGGAGTGTGGCCATTGAGCTGATATTCATGGCTGACACTTATCGGGTACTTACCTGGAGTATCTTGTAAACAAGATAATCCACATGGAAACCCTGTGAGGCAAATCCAGCTCTTATTCCCATCTTACACTTAAGGTAACTGAGTCTCGAAAGGATTAAGCGAGTATCCAGCCAAGAGCTTCAGAGACACAGCTCCCCTCCATCCACTGAGTGGGTCTGTCCCACACAGGATCCTCCCTCACTGGAGTGTCTGCTGAGCCCCTTAAACCCCAGACACACTGAGTGTAGCCCTAGCCAGGAGGCCACATATACGAAAATGGTTCCTTTCTCTACTGTCTTGCTTTGTGCTGTGCTGTGGTTATGTTTTCTCATATAGCTAAGGACGACCAGGAACCTCTGTCCCTCCTGCTTCCTCCTCCAGAAAAGGGTACACAAGTTTTGGTTTGAGAATTTTTAAGTGATTTGAGTGGCATTTTTGACATCTCATGGCTTCTGTCAGACATATTTCTAGGCTGGTTCCCCCAGCCAAGTATTCTTACCGTTTAACTTGGATGAAAGGATAAGAGCCAAACAAAAGCAACCATGTACCTCCAGGGCAGAGCAAACTGTAGCATGAACAGTCCACCTTTGTTTGAAGAATTCATCTCCTAAGACTATCCCTGGTGACACATAGTTGGGGGTTATCAAGATCTTCCTGTGCTTTTTCTGCCCCTCTGTAAAAAGCTCTGACTGCATATAAATATACATAGCATCTCCACACCAGTATTCAATGACCACAGCAGTTAATTGTGAATGAACTAGACTGCAGTCCATTTCCTAAACATAAGGTGACCCAAAACCAGAACAGCATCTTCGGGAGCTATTAATGTCTATCTCAGATGGGTCTTCTTCATTTTTTTCTTGTTCTTCAG
Seq C2 exon
GAACACAGCAGCTATTCCTTGACGGTGGAAGCAAGAGATGGTAACGGGCAGATAACAGACAAGCCAGTCCAGCAAGCTCAAGTTCAGATCCGTATATTGGATGTCAATGACAATATACCTGTGGTAGAAAACAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044393-Dsg2:NM_007883:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.396
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.0=100)
A:
NA
C2:
PF0002812=Cadherin=PD(32.0=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: