RnoINT0051406 @ rn6
Intron Retention
Gene
ENSRNOG00000016526 | Dsg2
Description
desmoglein 2 [Source:RGD Symbol;Acc:1311143]
Coordinates
chr18:15605355-15608046:-
Coord C1 exon
chr18:15607880-15608046
Coord A exon
chr18:15605493-15607879
Coord C2 exon
chr18:15605355-15605492
Length
2387 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
CATTTCTTCTCGTTCTTCAGGAA
3' ss Score
10.21
Exon sequences
Seq C1 exon
ATACACTAGTGATGAAAATCACCGCGACGGATGCAGACGATCCTCAGACCCTGAACTCTAAAATCTCCTACAGAATTGTCTCTCAGGAGCCTGCAAACACTCCTGTGTTCTACCTAAATAAAGACACGGGGGAGATCTACACAACCAGCTTTGCTTTGGACAGAGAG
Seq A exon
GTAAGTTAATGTCACCTGTCACCCTCGTGTCTTGCCCTCCCTAGTTTCTCCACTCCCTCGATTTGTATGTTCTCATTTTAATTAGCCCTGTATTCCTCACTCACGGAATAACTCAACAATAAGAGTTATTGTGTAGGGACGTGCTGCCGATATGGCAGTTACTAGCAACGTATGCTGTCTTGGAATGCGAGCCTTCCAAATTGACGTGCACTGTGTTCATATTGAAATGCGACTAGCTCGAGGTTGGGAAACCTGACATGAGGACTACAATTGCCTTATGACTCAGACATGGAGCAGGGCCTAGCAGTCGGAAGACAGACGCAGGAAGCTCTCCACAGGCTCAAGGGCAGCCTGTTCTATGTAGGCAGTTCCAGGTTACCCTTAGCTACGCAGTGAAACTCAGTTTCAAAATAAACACCTGGCCTGACAGCGCAGACTGTTAATCCCAGCACTCTGGAGGCAGAGGCTGCTGGATCTCCATGAGCTCGAGGCCAGGGCTGCATAGTAAGACTTAGTCTCAAAAGCAGAAAGGAGAATTAAAAAGTTCGTAATAGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAAGAACAAAAAAAAAAAAAAAAAAAGTTCGTAATAGAGAAAAGTCTTGTTTTAAATCTTTTTTTAAAAAAAAGAAAATTAAGAATTTGAGTAGTTTCGTAGAAAGATTATTCTCTCAAACATTTTATTTTGATTTCAAAAAAAATTTTTTGCCTTTATGCATATTAGTGTTTTGCTTTTGTCTGGCACCACATACCCGCCTGGTGCCTGCGGGGGTCAGAAGAGGGTGTTAGACCCCTGGGACAGCAGTTACAAGACAGCTGTGAATGCTCTGTGGGTGCTGGGAACCAAGCCTGGGTCCTCTGAGGAAGCTTCCAGTACTCCTAGCCACTGAGTCATCTCCTCAACCCTTAATTCTAATGTTTTAATCAAAGCGGAAATAGGTAGGCTTTAAGTGCCACACACACAGAATTTTTACAGCATACAAGGTAAAATGTTGGGGATCCTGAGGACACGGCAGTGCTGTCAGATGTAAATCTTAAGCAGCCGTGCTGTGACATGTTTCGGAACCAGATGCTCGAACGGGAAGGACCTCGGCCAACGTTCCTATTCAGGTCTTTGCGAGGTTTAAGAATCTGACCAGGGACTAACTTCTGTGGCATGCTCTCTCACATCAAACTGGAGTGGGAAAGTATTCCTTTGAGCAAGCTGCTGCCTCAAGTGTGGCCATTGAGCTGATAGCCATGGCTGTCACTCATGGGGTACTTACCTGGAGGATCTTCTAAGCAAGGTCATCCACACTGAATCCCTGTGAGGCAAATCCAGCTTATTCCCATCTTACACTTAAGGAGACTGAGGCTCAAAGGATTTAGTGACTGTCCAGCCAAGAGCTTCAGAGACACAGCTCTCTCCATCCCACACGGGACCCTCCCTCACTAATGTGGCTGCTGAGTCCCTTAAACCCCAGGCACACTCAATGTAGCCCTAACCAGGAGGCCACATATATGAAAAAGGTTGCTTTTTCTACTGGCTTGCTTCGGGCTGGGCTGGGCTGGGCTGGGCTGTTCTGTGTTATGCTATGCTGTGCTATGCTGTGCTGTGCTATACTGGGGTGGGCTGGGCTGGGCTGGGCTGGGCTGTTCTGTGTTATGCTATGCTGTGCTATACTGGGCTGGGCTGGGCTGGGCTGGGCTGTTCTGTGCTATGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGGGCTGTGCAGTGGTTCTTATGTTTTCTCATACATCTAAGGACAACCAGGAACCTCTGTCCCTCCTTCCTCCTCCTCCAGAAAAGGGTACACTATTTTTGGTTTGAGATTTTTTTTTTTAAATGCTTCTGAGTGGCATTTTCGACTCCTCAGGGCATCTGTCGGACATGTTTCTAGTCTGGACCCCAGCCAAGTCTTCCTGACTTAGCGTTTAACTCAGATTAAAAAGTGTAAGAGCAAAACAGAAGCAGCCACACACCTCTGGGGCAGAGCAAACTGCAGCACGCACAGTCCACCTCCGTTTGAAAATCTCCCAAGACTATCCCTGGTGACATAGTTGAGGGCTATGGAAATCTCCCTGCCCCTTTTCTGCCCCTCCGTAAAAGCTCTGACTGTGTGTAGATATAAATAGCATCTCCTCACCAGTAGTCGATGACCACAGAAGACGCTTATGAATGGACTAGACCACAGCCCATTTCTCACAGATAAGTGAACCAAAACCAGAACAGCATCTTCCGGGTCTGTTAATGACCGCCTCAGATGGTCTTCCTCATTTCTTCTCGTTCTTCAG
Seq C2 exon
GAACACAGCAGCTATTCCTTGACAGTGGAAGCGAGAGACGGTAACGGGCAGATAACAGACAAACCCGTGCAACAAGCCCAAGTTCAGATTCGCATTTTGGATGTCAATGACAATATACCTGTGGTGGAATACGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016526:ENSRNOT00000022270:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.304
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(55.0=100)
A:
NA
C2:
PF0002812=Cadherin=PD(32.0=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]