BtaINT0052997 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3513589-3514599:+
Coord C1 exon
chr23:3513589-3513672
Coord A exon
chr23:3513673-3514491
Coord C2 exon
chr23:3514492-3514599
Length
819 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TTACCGATATCTTCATGCAGGAC
3' ss Score
7.89
Exon sequences
Seq C1 exon
ATGCTGGTTTCTGAAATAGAAATGAAACAGAGCAAAATGGACGAGTGTCAGAAGTACGCAGAACAGTACTCCACTGCGGTGAAG
Seq A exon
GTGAGACTAGTTCCTTGCATCAGATTTCACGTTCAGGTGTTCAGGGGGATGTTTCCACAGTGCTCTTTAAAGCCTTCACGGGTTATTCAGTCTGTGTTGAAAAGTGAAACAGAGCATCTTCACTGTCACTTAACCTGTTAATTCTTCATGGAAACCTGAGTCATGTGAAAACCCCTTCTTTACTTCTCTCTCCGTGTCACACACACGCACAGCTTGCCCACACCCCCATGTACACCAGGAGAAAATGTAGCTCTGTCATCTGCCTCTTTCTGCTTCCCTTACCCCTTCAAGCATTGCTGGAACACCCACCTAATCCTAACCCATTAGTCTTGGTTAGGATTCCATGTGAGTATTGCTGCAGTATTCCATGGAAGTATTGATGGAGTGTCCCTGGAAATATTGCTTGAATATCCATGCAAATATTGCTGTGATATTCCATGGAAGAACATCTCCCTTAGGGATGGTTCCCATGTGCTCTGAGTCACCCGCCACATCTTGGCTCTGGCCATTCGGATCTGCAGTCCCATTTTTTATCTAGAAGAAGGGGAGACTGAAAATAACTGGCACGTTGTTCCTAAATGTGTCCATGAGCTCCTAAAGGGACTTAGGAACTTTCCTGACCACCCTAAATGTTTCTGATTTTTATTACCACCTTGGAAACATCTCAGGATTGGATTGATTCCTGAAAATGTGTTTTTGCAATATTTTTTATTTAAAGTCATTCACTGAAACTGGATTCCCTTTCTCTGCATCAAAGATCACTATAGAATGAAGCGTTAGTGCTTTGCCATGATTAATCTTACCGATATCTTCATGCAG
Seq C2 exon
GACTACGAATTACAAACGATGACCTACCGGGCCATGGTGGATTCCCAGCAAAAGTCTCCAGTGAAACGACGGAGAATGCAGAGCTCAGCAGATCTCGTCATTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAATAGAAATGAAACAGAGCA
R:
TCCTGAATGACGAGATCTGCTG
Band lengths:
182-1001
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]