GgaINT0079291 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89810981-89811260:+
Coord C1 exon
chr3:89810981-89811064
Coord A exon
chr3:89811065-89811152
Coord C2 exon
chr3:89811153-89811260
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TGTATTTTATGTTTTTACAGGAC
3' ss Score
10.24
Exon sequences
Seq C1 exon
ATGCTGGTTTCTGAGATTGAAATGAAACAAAGCAAAATAGACGAATGCCAGAAATATGCAGAACAGTACTCAGCTGCTGTGAAG
Seq A exon
GTAATAAATATTGATATACTTAGAATCTTCATTTACTGTCATTGTCATGTGGAATGCTGACCATTCTGTGTATTTTATGTTTTTACAG
Seq C2 exon
GACTACGAGTTGCAGACTATGACTTACAGAGCTATGGTTGATTCCCAACAAAAATCTCCAGTGAAACGACGAAGAATGCAAAGCTCATCAGACTTCATTATTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.361
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGTTTCTGAGATTGAAATGA
R:
TGAGCTTTGCATTCTTCGTCGT
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]