BtaINT0054750 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017927 | EGFL6
Description
EGF-like-domain, multiple 6 [Source:HGNC Symbol;Acc:HGNC:3235]
Coordinates
chrX:137102013-137106531:-
Coord C1 exon
chrX:137106266-137106531
Coord A exon
chrX:137102109-137106265
Coord C2 exon
chrX:137102013-137102108
Length
4157 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
TATTCCCTCTCCATTATTAGATC
3' ss Score
8.14
Exon sequences
Seq C1 exon
CTGTTGGCTACTATATGGCTGTTTCAGCCCTGACAGGTCAGAAGAAGGACATAGGCCGTTTGAAACTTCTCCTCCCCAACCTGCAACCCCACAGCAACTTCTGTTTGCTCTTTAATTACCGGCTGGCTGGAAACAAAGTAGGGAAGCTTAGAGTGTTTGTGAAAAATAGGAACAATGCTCTGGCTTGGGAGAAAACCAGGAGCATGGATGAACAGTGGAGGATGGGGAAAATTCAGCTGTATCACAGAATTGATACTCCCAAAAGC
Seq A exon
GTAAGTAGAAAACTATATAAAATGAGATATTTACATTCTTTTTCAGTGACTTAACAAACAAAGCAAAACACTTAACTGAAGTACCTAGGCCTTGGGGCTACAGAGATGAATAAGACTTTCCCCTCCACTTAAGAGCTTATATTCTGGAGTGAAATAGGCAAGGTATTTAACAGCACAACTAACGATATTACTTGTCAGATGCAGGCATATCATATTCTGTGGAAATGAAATGCTCATGTGTCAGGCTCCTCCCACCAACTTCCTTCCAAACCAGGCTCTAAATTCCTTACTACATAAAAGCACATCCTGCTCATTGACTTTATGCCCAGCACTTATCACAATGAATGGAAACTAGAAGGTCATTTTCCAAAATACTTATTTTATTCAAGTATAGTTAGTTTATAATGTTGTGTTCATTTCTGCTGTACAGGTGATTAAGTTCTACCTCTGTATACAGTAAGTCCCCTGCATATGAATGAGTTGTGTTCCTAGAATGCATTTGTAAGTCCAACAAATTTAGCCAAGGTACCCATCTAACTCAATTGGCTATATAGTACTGTACTGTAATAGGTTTATAATAGTTATCACACAAATAATACATTAAAAAACACAGAAAATAAAGAAAACATTTTAAATCTTAGTTTAGTTCACTTCAGTTCAGTCACTCACTCGTATCCGACTCTTTGCGACCCCATGAATCACAGCACGTCAGGCCTCCCTGTCCAACACCAACTCCCAGAGCGCACCCAAACTCATGTCCATTGAGTCGGTGATGCCATCCAACCATCTCATCCTCTGTCATCGCCTTCTCCTCCTGCCCCTAATCCCTCCCAGCATCAGAGTCTGTTCCAAAGAGTCAACTCTTTGCGTGACGTGGCCAAAGTACTGGAGTTTCAGCTTTAGCATCATTCCTTCCAAAGAAATCCCAGGGCTGATCTCCTTCAGAATGGACTGGTTGGATCTCCTTGCAGTCCAAGAGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAAGAATCAATTCTTCAGCGCTCAGCTTTCTTCACAGTCCAACTCTCACATCCATACATGACTACTGGAAAAACCATAGCCTTTACTAGACGGACCTTTGTTGGCAAAGTAATGTCTATGCTTTTGAATATGCTATCTAGGTTGGTCATAACTTTCCTTCCAAGGAGTAAGCGTCTTTTAATTTCGTGGCTGCAGTCACCATCTGCAGTGATTTTGGAGCCCCAAAAAATAAAGTCTGACACTTTCCACTGTTTCCCCGTCTATTTCCCATGAAGTGATGGGACCAGTTGCCATAATCTTCATTTTCTGAATGTTGAGTTTTAAGCCAACTTTTTCACTCTCCTCTTTCACCTTCATCAAGAGGCTTTTTAGTTCCTCTTCACCTTCTGCCATAAGGGTGGTGTCATCTGAATGTCTGAGGTTATTGATAATTCTCCCGGAAATCTTGATTCCAGCTTGTGCTTATTCCAGCCCAGCATTTCTCATGATGTACTCTGCATAGATGTTAAATAAGCAGGGTGACAATATACAGCCTTGACGTATTCCTTTTCCTATTTGGAACGAGTCTGTTGTTCCATGTCCAGTTCTAACTGTTGCTTCCTGACCTGCATACAAATTTCTCAAGAGGCAGGTCAGGCATCTGAAGATGTTATTCCCATCTCTTGCAGAAGCAGAAGCAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTGTACAAAAAAGATCTTCATGACCCAGATAATCACAATGGTATAATCACTGACCTAGAGCCAGATATCCTTTAATGTGAAGTCAAGTGGACCTTAGACAGCATCATTACGAACAAAGCTAGTTGAGGTGATGGAATTCCAGTGGAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAATATGCCAGCAAATTTGGAAAACTCAGCAGTGGCCACAAGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCCCAATTGCACTCATCTCACACGCTAGTAAACTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGACCCGTGAACTTCCAGATGTTCAGGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGACCAAATTGCCAACATCCACTGGATCATCGAAAAAGCAAGAGAGTTCCAGAAAAACATCTATTTCTGCTTTATTTACTATGCCAAAGCCTTTGACTGTGTGGATCACAATAAACTGTGGAAAATGTTACAGTACAGTACCTCAGAAAGCACAGTAGTGCAGTACAACAGCTGGCACATTGGGGCTGGCATAAAGTGGACAGGCAAGAGGAGTTACTGATGGAGGAGGGAGAGGAGGTGGGAGATGGTAGAGCTGAAGGATTGTCAGCAATAGGAGACAGAGGACGAGCTGGAATGTCACTCACGCCTGACATGAATGGAACGTACGTTTGCATCTCTGAAAGCTAGAAACTTGAAGGCTCATATGTAGGGGACCTAACTATAATTCTTCTTAATCTTTTCCATTATGGTTTATCACAAGGTACTGAATAGAGTTCCCCATGCCCTATAGTAGGACCTTGCTGTTTATCCAGTCTCTAATAGTTTGCATCTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCATGTCCAACTCTGTACGACCCCATAGATGGCAGCCCACCAGGCCCCGCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTCCTCCAATGCATCTGCTAATCCCAAATTCCCAATCCACCCTCCCCCACTCCACCTTGGTAACCGCAAGTCTGCTTTCTATGTCTGTGAGTCTGTTTCTGTTTTGTAGATAGGTTCACTTTTCTCATATCTTATTTTATTTATTTTTTGGCCCCAATGTGCCACATGCAGTATCTTAGTTCCCCAACTAGGGATCAAACCCATGCCCCCTGCATTGGGAGTGCAGAGTCTTAACCACTGGACTGCCAGGGAAGTCCACATTTGTGTCATATTTTAGATCCCACATGTGACTGGTATCATATGGTGTTGGTCTTTCTCTGTCTGACTTACTTCATTTACTGTGATATTCTCTAGGTCCATCCATGTTAGTTCCTGGACCAGGGATTGAACCTGGGCCCTGAGAGTGCAAGCTCCCAGTCCTAACCAAAAGACTTTTAGGGAATTCCCAGTTACTATCTTATATATGATAGTGTATGTATATTAATCCCAGTCTCCCAATTTATCCCTCCCTACCCCTGTCCCCTTTGGTAACCATGTTTGTTTTCTATGTCTGTGGCTCTGTTTTGTAAATACATTTATATGTACTATTTTTTCCCACTATTTTTTTTTACATTCCATATATAAATCATATCACATTTTTGTCTTTCTATGTCTTACTTCATTTAGTAGGACCAACTAGATCCATCCATATTGTTGCAAATGGCATTATTTCATTCTTTTTTATGGCTGACTAATATTCCATTACACCACACCTTCTTTTCCCTTCATCTGTGGATGGACATCTAGGTTGCTTCCATATCTTGGCTATTGTAAATAGCTCTGCAATGAACATTGGAATGCATCTGTCTTTTTGAATTACAGTTTTCTCAGCACCCAGGAGTGGGACTGGCCTATCATACAGTAGCTCTGTGTTTAGTTTTTTAAGGAACTACCATACAGATCTCCATAGTGGCTGTACCAATTTGCATTCCCACCAGTGGAGGAGGAGGGTTCACAACGATAATTAAATTTCTTCTAGCCTGGGTTTTGAGAAGAAAACAGTATTATTCCTTTAGTTTTGCTTTTTTTTTTTCTTCTAAAAGGGAAGGAATTCCAAAATTTCCTCTTAAACTTTACTATTCTCAGCTTTCAGGGCTTTTCAGATTCTTTTAGGTGTTGCAGGAGCCCTGTTTTCTCCAATTGTAATTCAGTCAGTGTAGATACCAGGCATCTGGAAAATACATTACCATATATTCAATGTCAAAGCCTGTTTCTATGGAATAGGGGCATATGAATTGAATTCAGTTTAATAGCAATTAAATAGTGGGACTTTATCATTGCATTAAATACTTGCAAGTAATTTTTTATTCCCTCTCCATTATTAG
Seq C2 exon
ATCATTTTTGAAGCTGAACGTGGCAAGGGCAAGACTGGAGAAATTGCAGTGGACGGTGTCTTTCAGGTCTCAGGCTTATGTTCAGATGGCCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017927:ENSBTAT00000023842:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(60.7=100)
A:
NA
C2:
PF0062918=MAM=PD(19.3=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]