MmuINT0055800 @ mm9
Intron Retention
Gene
ENSMUSG00000000402 | Egfl6
Description
EGF-like-domain, multiple 6 [Source:MGI Symbol;Acc:MGI:1858599]
Coordinates
chrX:162960939-162965511:-
Coord C1 exon
chrX:162965246-162965511
Coord A exon
chrX:162961904-162965245
Coord C2 exon
chrX:162960939-162961903
Length
3342 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TTTTCTCTCTCTGTTCTTAGGTC
3' ss Score
13.81
Exon sequences
Seq C1 exon
ATGTTGGTTACTATATGGCAGTCCCTGCACTGGCAGGGCACAAGAAGAATATTGGCCGATTGAAACTTCTCCTTCCCAACTTGACACCCCAAAGCAACTTCTGTTTGCTCTTTGATTACCGGCTGGCTGGGGACAAAGTAGGAAAACTTCGAGTGTTCGTGAAAAATAGCAACAATGCCCTGGCATGGGAAGAGACTAAAAATGAGGATGGAAGGTGGAGGACAGGAAAAATCCAGTTGTACCAAGGGATCGATACTACCAAAAGT
Seq A exon
GTAAGTGCGGAAGGAACTTCATATTTACATTTTGCTTTTTAAGTGATTCAACAGACTATTTACTGATGTCTATAGGTCTTAGGAGTACAAAGATAGCAAGAGTTGTCTAATCAGCATGACTAATGAGGGTATTTGTCTGGTTCTACAGAAGTGGCCTATCGGTGTGTCTGGCTCCTCTTACTAACTTTCATGAAAACCAGGTTATGCATTCTTTAATATGTTAAAAAATAAACACTCCAGGAAAAAAGATTTCCCATCTATTCTTTGTGTGGAACTTGCTCAATAAATGGCAGACAGAATATGATTATATTTTAAGGTTGTTTTAACTGAACTGAAGGGGGTGACTGTTATGAGGAATTCTTAGGACCATTCTAGGGTGTGTGTGTGTGTGGTGGGGGTGAACCTTTAGAAGGTCTTGTAGAACTGATAAAAACTGTTACATTTACAGTTGTTTATATACATTAAAACCAACAAGGAGAAAATGGGATATAAGCAGAGACCAGAAAGGACCAGACAGAAGTTTATAGTTTTCCTTGCCTGGGCAGATCTTAATTTTCCTAGCAACCACATAAGGCAAGACTCACAACATATTACACACCAGCAAAGTTTGCCCAGATCTTGGTATTCAAAGGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATGTGTGTGTGTGTCTGTTTGTTAATGTGAAGGCCATGGTTAGGGGCTGAGCCACCTCAGCTATTGTTACTCAGACCTATCCACTTTATTTCCCTAGACAGGCCTTAAACTTGCCAAGTATGGCAGACAAGCTGACAAGCAAGTCTAAGGGATCCACCTTCCTCTGTTTCCTCAGCACTGGAATTACAAGTGCATATCGCTATGCAGAGCTTTTTGACATGTATTCTGGGGATTAAACTCAGGTCCATCTGTTTACAAAGCGAGCACTTTATCACTGAGCTATCTCTCCAAGCCCTCAAAGCTATCCCTATGGGTCTATCTGCCCACATCATTGCCAGCATGGCTGACCTTAGTTATTTGGTCTCCAGCATTCCCAAAGGCTATACTGATATCATGCAACCCAAGGCCCCTATCGTAAATAACATTCTGAACATAGACCATCTGACTTGGCTAAAGGTTACAGGAATATGAAAACACTCTGGACTAAGTAGTTTCAAGGGCTTGGAGGCTGACTCTTAGTAAGCAGTCAAGGGCAAAGCCTTCTTTCAAATGTTGAGCTTTCGGACAACTCAGACCTACTGAGTTAATCTTTTACTGTAGAAATGAGTTTGATAAAGGAAAAGGAAACTCTTTTAAGAGGAAGTTGGTTAATGAATTTGATAAAGAACAAATAGAATAAAATGATGTAGAGTTTGCTGAGTTTGGAGCACCTTGACAAGAGCTGTTTCCTGAAAGAGAAGGGCCAGTAATCACATAATAGAAGAACAAAGAGGGGGCCTGGGTTGCTCAGTTGGTAGAGGAATTGGCTCACATGCACAAAACCCTGGGCTCAGTCCCAGCACTGCATAAACCATGCATGGTGGGGCATGCCAGTAATTATAGTGCTCAGAGATAGACACAGGAGGATAGACAGGGCAAGAGCATCCTTGGATATATAATGGACATCTGTTCTCATATGAACACACACACAGACACACACAGACACACACATCACACACACATACACAGACATACATACACCACACAGAGATACAGACACAGAGACACACACAGACATACACACACACACACATATACACAGACATGCACACACATAGACATGCATACACAGACACACAGAGAGACACAGAAATATACAACACACACACACAGAGACACATACACACACACACATACACACACACACAGGCACAGGCAAACAGACACAGACACACACTCACACACAGAGACTCATACACACAGACACAGACATACACAAAGACACAAATACCACACACACACAGAGACTCATACACAGGGCAAGAGCATCCTTGGATATATAATGGACATCTGTTCTCATATGAACACACACACAGACACACACAGACCCACACAGACCCACACATCACACACACATACACAAACATACATACACCACACAGAGACACACACAGACACACATATACACATACACAGACATGCACACACATAGACATGCATACACAGACACACAGAGAGACACAGAAACATACACCACACACACAGAGAGACACATACACACACACACAGGCACACAGACACACACTCACACACAGAGACTCATACACACAGACACATATACACAGACATACACAAAGACACACATACCACACACACACAGAGACTCATACACACAGACACAGACACACACAGAGATACACATACCACACACACACAGACACACACAGAGAGACACATATACACGCAGACACACACACTCATACACAGACACACACAAAAACACAAATACACCACACACCACCTACACACAGAGAGACTCATACACGCAGACACACACACAGATATACATACTACACACACACAGGCACAGACACACACACACATACACAGAGACTCATACACACACACACACACACCCCACACACATACACAGACACAGACACACACACAGACACATACACCACACACACACATATACAGACACACACAGAGAGACACATATACACACACATATACACAAACACACACACAGAGACACATAAACACACAGAGACACATACCACACACAGAGAAAGACACATACATGCACGCAAATACACAGATGCACATACACACACGTACACACATATTCAGACACACACACACAAGACACATACACACACAGACACACTCATACACAGACACACACACCACTCACACACAGACACACACAGAGAAACTCATACACACACAGACAGAGATATACACACAGACACACACACACACACACACCACACACACATACAGAGACACACATACACAGACACACAGAAACACACACACACGTGTGCGCATGCACTTAAAGAAATAAAATTTAAAAGTAAACAATAAAAGATCTTTCATTGATTTTGCTTCATTTCTTTACATGGCAATTCCAAAAGTTCCCTCTTCAGAATTACAGGACTTTTGAGAATCCTTCAGAGCTTGCTGTGAGCCTATCTTCACTGAACAGAATCCTCACCATGAGAACTTAGCATGTAGGAAACACGTTGGCATACAATCAATATGATTATATGTAATCATATGAAAGGCAATTTCTATACAGTAGAAAGTCAACTTTAGTCCTTGCTAACAGCAGTTCAATAGTTTGCTAACATCATGGCTGGGAAGTAACCTTCTTTTCTCTCTCTGTTCTTAG
Seq C2 exon
GTCATTTTTGAAGCAGAGCGTGGCAAAGGCAAAACTGGAGAGATTGCAGTGGATGGAGTCTTGCTGGTGTCAGGCTTGTGTCCCGATGACTTTTTATCTGTAGAAGGTTGACTGTCACTGTCCTCCTTTGTAGCTTCATATGTGGCTTTTAAAATGTCATTTCTCTAGGGTATCTTTTTATATCACAGCCTAGGACTCTTCCATCTTATAATTACAAGCTGACAGTGTACAATGTTCCAACAGAAATATTATCATAACATGCCTTTTTTGTATCAAATGTACTAAGACTTGCCTATATATAGTGCCACTGTGCCTTCTCATTTGTTTCTGAATTTTCCACATTTTATTACAAAATGTAGAAATGCTAGCCCATCTCCCCCTGCCCTATACATTTGCTCTTCCTATATAAGTTGGTGAACTTTCCTATATAACAACATAGAATAACAACAACAGAAAATGATAAGTACAGATAAATGGTTAATTGTTGGGGCTGGGAAAATGGCCCAGTGGTTAAAAGTATTCATTCCTCTCGAGGACCCAGGATCAATTTCCAGCATCCACATGGCAGCTCACAACCATCTGGAACTCCAGTTCCAGAGAATCCAATGCCCTTCTGGCCTTTGTGGAAACTTTCATATGTATGGTATACATGCATACACTACACTACACTACACTACACACACACACACACACACACACACACACACACACACACACATACACACACAGAGTAAATCAATTTCTTAAATTGTTTAACTTTCACGGTACTTCTTGGAAACAATGACATTAAACATAGATTTGTGCCTTTGTGGCTCAGCCTGCTCTTTCATAGTCAAGCTTGCTCATTTAATTTTTTTATAATCATATCCAGTAAACGGCCTTGTGTCATAGTAAGATAAAATGGTATCTTACTGACTCTGTTTACTTATGTGTACAATTCTGGAAAATAAATTTTTTTATTCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000402-Egfl6:NM_019397:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(60.7=100)
A:
NA
C2:
PF0062918=MAM=PD(19.3=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: