GgaINT0111882 @ galGal3
Intron Retention
Gene
ENSGALG00000016584 | EGFL6
Description
NA
Coordinates
chr1:126433335-126435473:-
Coord C1 exon
chr1:126435208-126435473
Coord A exon
chr1:126433996-126435207
Coord C2 exon
chr1:126433335-126433995
Length
1212 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CATCTCTTTTCTTGTGACAGATC
3' ss Score
9.69
Exon sequences
Seq C1 exon
GTGATGGGTACTACATGGCTGTTCCAGCCTTTGTGGGTCAAAAGAAGGATATGGGCCGCCTAAAACTTCTCCTGAGCGACCTCAAACCAAAGAGCACCTACTGCTTGATTTTCAGTTATCGGCTCGCTGGCGAAAGAGTGGGAAAACTTCGAGTGTTCATGGCCAACAAAAAAACTGCTCCTGTCTGGGAGCAGGACAAAGGAAAAGATGAGAGGTGGAGAACTGGAAAAGTAGAAATATTGCAGGGGGCTGAAACAACTAACAGT
Seq A exon
GTAAGTCTAAGTCAGTTTATAACCTAACAACTATACCAAACACAGCAGGTATGTTTCCTAATCCTCAAGTGTTCCACCAGCTTTTACAGGCATCATATGCTCTCAATTGAAAGGCTGTTTTGAAATGGGGGAGTACAGATTTTAGAAGGATGAGAAGTTATTATATGGTTGTAATTTCAGAACTGAATTGCTCCCGTTTGCTAGGACACTGATGCCAAATAATCCCATCATTTTGTAAAAACTTCATCAGATCTTCAGTTATCAAAAACTATCAGAATCTCTGTTTATTATTTCATGCAACAGGAGGCATAAGTATATGCTTGGAAAAATGAAAATTATCCCTGTTTCGTAGAAAACAATGCTCTCAAGCCATACTCACAAAGATCATTAGTGCAAAAAGAGACATCATTTATAATCAAGGTTGGGGAGTCAAGTTGGTGCAGGGGATGTTTAGCCAGCAGAGAACGCCGTGCCCCGATACTTCTCTGAAAACTGCCTCAATAAGGGCTTCAGCAAGTTTCTTCTTGAAATTCCAGAGCCTGGTTTTCATTTATATGACTGAATATTGTCAGTGCAGGGCAAAGGGTTATGTGTACAATTGAATAATGGAAGCATAAAGGAAATTGAAGTCCTTTTTGAAGTTCTTTTGCACTGCCAGAAGGACATAGAGGAACTCCTGCGTAAATAAGAATCAGTCTATAAAATAGAACGCCAGGCATTCTATTGATAAAAACAAATCTACTGTGTGTGTGTGTAGTGCTGCAATTATAATTAGTAACCTACTATATGTACAGTAGATAGAAATATATGTGTTTATCAGATATATAACCTAACACTAAGGATCCAAATATATGGAAAATGAACAATTGTAATGTCTCCAAGAAAAGGAGGGCACTAACATCACATATAGTAATAATGCCACATTATTATAATGGGATTTCACTCAATTAGCATTTTCTTTGTGTAATGAAAATAAGCAATCTTATTAAATGAATCCATTTGGTTTTGTAAATCTGTACAGAGGATTATCATGCCTAGTTCAAATAATATATAAAAATTCTAAAAGCTGCAAGGATTTGAGTCATTTAGTCTTTCCTGGAATATAATAACACGTTCCTCAGATATAGCATTTAAACTATTTAACCTCAGGAGTCAGTGAATGGTTGGATAAACTACATTTTCACTGTTAATACATCTCTTTTCTTGTGACAG
Seq C2 exon
ATCACCTTTGAATCAGAACGTGGGAAAGGCAAAACTGGAGAAATTGGAGTGGACAATGTTATACTAGTTCCTGGTCTGTGCCCAGAAGACACCTGAGGATGGATATTTGACTATACTGGATTTAACTCTATTTTTAATACTTGCCTTACTAGTAGTGTATTTTTAATCTTTTCATTATAAAAAAACATGAAAACGTAAATTTAAAAACTGTGCCTTGAACTTAGTGCAGCAGTGCAAACAGGGACTGACATGTGCAAGATGCAGAGCACGCTTTTTTATGAGTTAGATCTAATACATGCTTTGAATGGAACACTACTGTATTTCATCATTCCAGGTCAGGGTTTCTGAGGCATTAAAATCTTTGTCTAGCTTTTTTACAAATTCTGTATGCTTTCATTCCTTAAAGCTCTTTTCAAGGCTATTCTTAAGTCTTCTATTGCATTTCTACTTCACAAGAACATAAAGCAGTATTTAAGAGGATGCTACTACTTCTCGTGATGTAATTTTAACTTCCTACTTAGTATGTAGATGTTAATTTTATTCGAAAAAAAAGAAAAAAAGAAGAATGAGGAGGTTTTTTCCCGTCTTGACGGAGCTGAATATTAAGTGGAGTCATATCTTTGGGGAATATTTTAATTGCTAATAAAATATGCAAAATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016584:ENSGALT00000026770:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(60.7=100)
A:
NA
C2:
PF0062918=MAM=PD(19.3=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCAGCCTTTGTGGGTCAA
R:
ATCCTCAGGTGTCTTCTGGGC
Band lengths:
346-1558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]