BtaINT0054896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105451655-105456608:-
Coord C1 exon
chr11:105456502-105456608
Coord A exon
chr11:105451778-105456501
Coord C2 exon
chr11:105451655-105451777
Length
4724 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGC
5' ss Score
6.32
3' ss Seq
TCTGTCCCTCTTCTCACCAGGCG
3' ss Score
10.63
Exon sequences
Seq C1 exon
TTGACGGGATCGACCCCAACTTCAAGATGGAGCATCAGAACAAGCGCTCGCCCCTGCACGCCGCGGCGGAGGCTGGCCACGTGGACATCTGCCACATGCTGATCCAG
Seq A exon
GTCGGCCGTGGGCCGTGGGCGGCAGCGAGGGCCCAGGGCCTAGCCGCTGCCGTCCTGAGGGTTGTGTGCCTCTCGGTGTTTCCCGATTGGTTCTTGTTCACTTCGGGTTTCCATGTTGCCGACTTCCCAGGCTGGGGGTCCAGCCGAGGCATGCACACGTGCCACTCTGCCCACCTCCTGCAGTGAGAGCTTATGTCCTGTGGTCCCGTGAATATTCCATGGTTGTATGAGGGGCACCCCCCACCCAGCAGGCACACTGGCCTCTGTGTTATCTGAAAGTGCGTCGCCCACTCTCAGCACTGTCTCTCTGGGAGGTCTCCCCAACCCAGGCCCCTGTGGGACCTCTATTCTTTGGAGGCCACCTTGCAGCTGGTTCTTCATCTCTGGATCCTTCAGGAAATCTCCTTTCGCTCGTGGGTCTAGACTTGCTGCTCAGCCCCCAGCTCAGTCTGGGGGGTTTTCTGTCTGGGCTCTGGGGCCCTCCCTGAGCGCCCACCCTGTGTTTCCCTGGCGCACCTTCTCTCCAGCTCTGCGTCCTTCGAGTCCACCTTCTTAGGCGCTGCTCCACGTGACCCTCAGCTCCTTTTGGGGGCTCACAGGTGCTGCCTCATTTCAATCCCTGGGTCCTCTCTTGCTTCCCTAGAGCTCCTTCTCAGTGGCCTCTGCGTCTCCCTGCAGTTGGACACTGTGCTCCAGTCTTTCTCATTTCAGGCTTTACCCAGATGCCTGGTGCTGGCTTGTTTGTGTGAAAAGGAAAGGGCTGCAGTGCCGGAGGTGGGCTCTTGGTTGGGCCTGTGGCCTGGCAGTTTTCGTGCTGGGGGCCACAGGAGGGCTCTGGGCCTGGGAGCACAGTGTGCCTCCGCCGGGGCCTCGGGGCCCCTGTCGCCGCCCGCTGGCCTCCAGGGTGTGGTCTCAGCAGCTCCGTCCTGTCTGCTTGCCCTCACCGGTGCTGCACACACAGAGTAGGGTTGTGTGTCAGGGTGAAGCTTCTGCATCGACGTTTACAGTAGGTTTACGTGTTGGCTTAGATTTCTGACGCCTGAGACCTGCTTGTCAGATCCCTCTCAGCTTTGGCTTGGGCACGACAGAGGCTCGTTTGGACGGACCTGTTTAAATAGCGTGCAGCCGGGTTCTGCTGCCGCCTCTTCTGACTTCCTTCTTCCTTTAGAGGAGGTGGCTCTGCACTCCTTTGAAAAGACGTATTTCCTCCAACCTTTTTGAAAGAAAGAAAAGAAAGTGAATTTGCTCAGTTGTGTCCGACTCTTTGTGACCCCGGGGACTGTAGCCCAACCAGGCTCCTCTGTCCATGGGGATTTTCCAAGCAAGAATACTGGAGTGGGTTGCCATTTGCTTCTCCAAGGGATCTTCCCGACCCAGGGATCAAACCCGGGTCTCCCACACTGCAGGCAGATGCTTTACCGTTTGAACCACCAGGGAAATTCCACCTTTTTGAAAAAATTTATTTATCTTTTTTTTTGGCAGTACTGACTCAATGGATGTGAGTCTGAGTAAGCTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGCAGTCCACGGGGTCGCAAAGAGTCGGACACGACTGAGCGAGACAGCACTGAGCTGAGCTGGGTTTTCACTGCTGCTCTGGCTTTTCTCTCGTCGCGGTGCTCGGGCGTCTCTGCGGTGGCCTCTTACCGTGGAGCGTGAGCTCTGAGTGTTCGGGCCTCGGTAGTTGGGTGCGTGGGCTCCGCCGTTGGAGCTCCCGGGCTCTCGAGCTCAGGCTCAGCAGTTGCCTCATCCGGGCTTAGTGGCTCCGTGGCGTGCGGAATCTTCCCAGGTGAGGGGTGAACCCGTGTCTCCTGCACTGGCAGATGCATTCTCCACCACTCGGCCACCGGGGAAGACCCCACTGTTTCCCTAACATTAGAGTATGTGCACGTGCACACGTTTGCTGTTGTTTAGTTGCTAAGCCGTGTTTCAGTCTTTGTGATCCCATGGTCTGTAACCCACCAGGCCTTTCTGTCCATGAGGTTTCCCAGGCACAAATACTGGAGCGGGTTGCCATTTTCTTCTCCAGGGCATCTTTCTGACCCAGCGTGTAAAGAGTCCTGCATTGGCAGATGGATTCTTTACCGCTGAGCCACCAGGAAAGCCCGTGTGATTAATAAAGAAGAGTCTAAAATGTAAGCATCTTGGTTCATTTTAATCGCTCTGGAGGGAACCGGCCTGGGCTGCTTCTCCCCTGAAGCACCGTCTCCCCTCCTTGAGCAGCTCTGAGGTTGACGTCATCATGACCATGTGTGTGTCTCTATGGGCTCACTGCCCTGCAGGCATCCTCGGCCACACGGCTGAGCTCTGTCCAACTCTGAACTCCACATGGTGTGACTTGTTTGCCTTCTTTCGTTCAGACAGCAACAACAGAAGGGGTCGTTCAGACCCAGGGGGCCCAGCATGGCCTGGGGGCCACTCATGACCCACTGTCCATTCCTGCTTCTGCCCACGGGCCACGATCGAGGAAGCCGTCCTGGGAGGGAGCACAGGCGTTGCGTTCTGTTTCACAGCCTCTCTGGAGTCATAAACTGTAGCAGAATAAAATGTGACGTGTTGGTTTAGAAAAAACAACACTTCACACGTTGGCGATCTTTACGACTCTGCATGTCTGTCCGAGCCTGGGGGTGTGACGGCTGGGCACCTCTCAGGTGAGGTTCTCAAGCGCGCAGTTGAGTGGTGTCCAGGGCTGTGCACTCCCGAGGCGGGCCGCCCTTCCCCAGAGCCCCGGTGTGCGCGGTGGGCGGGCTCACTCTGCTTCGCCCTGGATCCCACGGTGCTGCTTCTTGGAGGTCCCGCTCTCCTGGGTGCCTGCTTCCTGTGCCCTCCTCCCGGCAGGCCCTGGCCCTGGCCCTGGCCCTGTGCCCTCTCCTGGCCCCAGGCAGCCAGGAATCGCCCTTACTTACCATGTGGTCAGGGTGGGGGCCGCCTGTGAAGAGAGTTTTTGGTCATTCTTGGCCTGACTCGTTTCCATGCCGAGGTCTCCGTAGAAGCAGCTCCAACTAGGCAGCTGCAGCGCTGTGGCCATTGAACTAAACGAGGCCCAAGCAGGGGCCGCCTCCCACGAGCTGCCGCGGGCTGGGCCAGTCCCAGCCTCCGGCCGCGCCCGGTTGTCCCCACACCGGCCCCTGCTCTGGCCTCTCCTGCTGGTCCTCCGTCTCTCCTGCACGTCTGTCTGTCCTGGTTCTGTCCCCGTCCATCCCTCTAGGAGGTTTGATCAGGTCCTCCAGCCTGCTCTGCCCTGATCTGGTGCTGGCTGTGGGCCGATTAGAAAGGTGCCTGTCCTCGCAGCCTCAGGGCCCAGGGAAGGGCAGAGCAGCGGCTGTTGCCCTGACATGTGCCGCCCTGTTCTCTGGGGGCTCACCCTCCGTCCCCCTCCTCCCAAGTCTCAGATGGCTTGGCATCATCTCCTGGGCGCCCCGCCTCTCCCTGGGATGGTCATTCACCTTCGGGCTGGCTTCCCTGCTGTGGTCCAGGGCTGCCCACACGTCCTTGTGCGGGGCTTCCGTTCCGCCGGTTGGGTGGGTCACTGACTAGCTCGGGTTTCAGACAAGCGCATGGAGCACCAGTCCTCGCGGTCCCGGGGTTTTGGCGTTGGGCGGGGGAGATGTTCCTCTGACCCTGACCCTCTGCAGCGTGGCCCCTGCCTCCACTCTTGGCCATCAGCCTGTGCAGCCCTCTCAGACCTGGGCCCTCCCTTTGAGGCTGCCCACCCCCTGAGGGCTCAGGGTGGATGGGGGTCTGGGGGAGTCTTGCCAGGTGCGTGCCCCCAGTCACAGGCACTGCCTGGCCTTCTGCCGGCAGAGGCTCATCCTGCCTGTGCACCCGGGCAGAGTGGCTGGCCCCATGCTGGCATTCTGGGCTCTGTGCTGCCTCCGCCCTGCCTGCCCCTCACCTGTGTGCTCTTCCAGGTTGCTGTGGGGTCCCGACTCCACCTCGCCCTCAGGTGGGCTTGGACCGGTGTCCCGCGCGTTTCCCACCCACTGCCCCCGCTCCGCCTGTGGCTCCGCCTGGAGGCCAGCGGGTCTCTTTCCAGCCCCTGCTGCTCAGCCCCTGGCTTCTGTGGGCCCTTCTCTGTGTGCTTTTTAAGTTTCTCACTAAACTGTTACTCTTATGTTTTAATTGCTAATAATTAAAACAATCTTGCAGGTGTTAGCTCTTTGTGCATTAGTCTACATTAGTTTCTCCCCCAAAACACAGAAAAGGTTCAGCTGCCAAATAGTCACTTTGCTCTGAGTGGACAACTCACCTTGGGTGTCTGCAGTTTTAGGCAGAATTTACCCAAGGCCTCCTGCGAGCTCATTAGTTTTTAAGTACACCCACTACTAGAAAAAAAATGCTGGAGATGAATTTTTGTTCAGTTAATTTCAGCAAGCATTAGAACAGCCCAGAAAGAGCTCTGAGGTCACTGCAAGCTGGTCCCCTTGCCTCCTGGCCCTGCCTTGCGGAGACCCTCTCCTCACCTCTTCTCTGTCTGCGCTGGGGTCTCACTTTCTTACTTCTAAGGGGTTGTCAGTGATGTTGCTATCTTTACCAAGTTAACTGAAAAGTGAAACGCTCTTCTTGACAGAAAATAGAACCATCACTTTGGAGACGGCAGAGAGACCTCCCGGGGTCTCTGCTGTCTGAGTCCGGGGGCTTTCCTCCCTGGGTGTGGCTGCAGGCTGAGTGTCTGTCCCTCTTCTCACCAG
Seq C2 exon
GCGGGCGCCAACATCGACACCTGCTCTGAGGACCAGAGGACCCCGCTGATGGAGGCCGCGGAGAACAACCACTTGGACGCGGTGAAGTACCTCATCAAGGCCGGGGCCCTCGTGGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF0002325=Ank=PU(68.8=61.1)
A:
NA
C2:
PF0002325=Ank=PD(25.0=19.5),PF127962=Ank_2=PU(26.6=61.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development