BtaINT0055544 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53281238-53283229:-
Coord C1 exon
chr16:53283132-53283229
Coord A exon
chr16:53281367-53283131
Coord C2 exon
chr16:53281238-53281366
Length
1765 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CCCGGCCCCCTCTCCCCCAGCTC
3' ss Score
8.99
Exon sequences
Seq C1 exon
GTCTCCCTGCAGTACAGCTCCAGTGGCCAGTGGCGTCACACCTGCGGAGGGTCTCTGATAGAACAAAATTGGGTCCTGACAGCAGCCCACTGCATCAG
Seq A exon
GTAATTGCTATTCCCCCGTCTCCCCGCCCGCTCACCCTACTAGCCAGCACTCATCTCTCAGTTAGAGCCCAGATGGCCGAAACCACCCCATACAAAGGAGCATCGCTCATAACCACTTCCTTGGCCAAGAAATACACTCTCTTCGATCTACAGTTCAGTCTGTTGGTCAGGTGATAGACCCATATATGTATATGGATTGACCGTCCTGTGCAGGGCACTGAGGGGGACTATGGGGAGGGAGAGGCCCATTTTCTGCCCTTTTGGGGCAAACTAGATACGGCCTCTGGATCTGGAACTGGGTTCACTTGAGCTACTTGAATGACTTCTTCATCTCAATACCATCACCCGCAAAAAAGCAGATAGCGGTGTTTGCAGTAGTTGTAGTTGGGACGCTCAGTCGTGTCTGATTCTTTGCGACCCCATGGACTATAGCCTGCCAGGCTCCTCTTTCCATGGGATTTTCTAGGCACGAATACTGGAGTGGGTTACCATTTCCTTCTCCAGGGGATCTTCCCGACCAGGAATCGAATCCGTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTAAGCCACTGGGGAAGCATCCATGGGTATTCAGTGTGGATTCAACGAGATGATGCATTAAACGGGCCAGCACAGAGTAAGCGCTCAATAAAAGTGAAACTAGCACCATTATAAAGGCCCACGGGGAAAGGAAAGGCTCTGGGACATCCATTGTTCACCTGTCCTCTTCCTTCCCTCCAGCCTCTGCTTAGCTTACACAGGCTGGCGCTCACTGGAGTTTCCACTGGGCCAGTGGGACACTCTCGTTGTCAGGGGTGGCCCCTTCTCTCTACCTTATTCACAAGTTCTATGAGGTGGTGGGGGAAATCACAGAGGTCTGGGATTCAGCAGTCCTGTTTCTAGCTCCGAGTTGTCACTAACGAGCTGGAGAGTAAGACTTTGGACCAGGTAGTCCTTCCTAAGCCTCAGGCTGGCTTCCTAGGTGGTTCAAGGGTGAAGAATCCGCCTGCCAAAGCAGGAGACGCAGGTTTGATTCTTGAGTCAAGAAGATCCCCTGGGGAAGGAAATGGCAACCTACTGCAATATTCTTGCCTGGAGAATCCCGTGGACAGAGGAACCTGGCGGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACAACTGAGCGACTGAGCACGCACCCTCGCGTGCAAGCCGCAGGGTTCCCCATTTAAAAACAGGAAATGAGGAGTTAAACTAAAAAAAATGGCCTTGGGAACTTCCCTAGTGGTCCAGTAGTTAAGACCCCGTGCTTCACTGCAGGGGGCACAGGTTCCATCCCTGGTTAGGAAGTTCTGCATGCCATATAGTTGTGGCCAAAAAAGATAATAAAATTTAAAAAGTAAAATAAAAAAAAATGCCCTTTAAGTTAAATGACTGCGGTTATCTGTATCCATCTCACTTCCCCTATAGTAATATAGAGCTTATATTATTATAACTTTTATTTTATATTATAGTTTACAGTTGGTATAAGGTAGTTGTAATTACTGTTTTGTTGTAGTTATTATGTTACGTCGTAACTAACCGATTGCCCCAAGGAAAGAAAAATTCCCAGTGCCAACTAGTGGCTCTTGGAGCAGGAGCTGGCTCAGGTCGCCCAGCACTGTCCAGAGCTTGGTCTCTAACCGGTACATTCATTGGGGTGTCCCAGCCCATAGGGCTCAGAGAGAGGAAAGGACAGCCCAGAGCTCACCTTCCCTGCCCGGCCCCCTCTCCCCCAG
Seq C2 exon
CTCCTCCAGGACCTACCGAGTGGTGGTGGGCCGGCAGAGTCTCTCCACCGTTGAGTCTGGCTCACTGACCATCGCAGTCTCCAAGTCCGTGATACACGAGAAGTGGAACTCCAACCAGCTCGCCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496:ENSBTAT00000034039:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCCCTGCAGTACAGCTCC
R:
GGCGAGCTGGTTGGAGTTC
Band lengths:
222-1987
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development