MmuINT0034147 @ mm10
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141821702-141822327:-
Coord C1 exon
chr4:141822230-141822327
Coord A exon
chr4:141821831-141822229
Coord C2 exon
chr4:141821702-141821830
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTTACTCTGCCCCTCACAGCAA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
Seq A exon
GTAACAGAACTCCAATGTTACCTGCTCCCTAGCTGTTCACGGTGTCCTGGAGTGGCACTGAGCCCTAGAGCACAGATCCCCAACTGGACCGATCCATGGGCTGTAAATGAGACCTGGAGAGAATCCTCACGCGCCTGCCTTCGGCGCAGGCGCACATCTATAGGTGGCTCAGGGTTGCAGGATTCCCTGGTCCATACACAGCACTGCACTGAATGCCCCGTGCCAGAAGGATACAGAGGAAGAAACAGCCCAGCGCCTGCCTTCCTGGGATAACCAGTAATGGTTCTGGATTGTTTCCTTGATAGCTCTCTGCACTAGGTTGTCCTTGCTCACAGAGACTGGAGGGCAGGGGGCGGGGGGAAGAGTTTATGGACCTCTCTCTTACTCTGCCCCTCACAG
Seq C2 exon
CAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCAACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAACGTCGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579:ENSMUST00000102481:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCAGGTCCTTTCCTC
R:
ATTGCCGACGTTTTGGGAGTT
Band lengths:
223-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types