MmuINT0034147 @ mm9
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141377617-141378242:-
Coord C1 exon
chr4:141378145-141378242
Coord A exon
chr4:141377746-141378144
Coord C2 exon
chr4:141377617-141377745
Length
399 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
TCTTACTCTGCCCCTCACAGCAA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GTCTCCCTGCAGGTCCTTTCCTCCGGAAGGTGGCGCCACAACTGCGGAGGCTCCCTGGTGGCCAACAACTGGGTTCTGACAGCTGCCCATTGCCTCAG
Seq A exon
GTAACAGAACTCCAATGTTACCTGCTCCCTAGCTGTTCACGGTGTCCTGGAGTGGCACTGAGCCCTAGAGCACAGATCCCCAACTGGACCGATCCATGGGCTGTAAATGAGACCTGGAGAGAATCCTCACGCGCCTGCCTTCGGCGCAGGCGCACATCTATAGGTGGCTCAGGGTTGCAGGATTCCCTGGTCCATACACAGCACTGCACTGAATGCCCCGTGCCAGAAGGATACAGAGGAAGAAACAGCCCAGCGCCTGCCTTCCTGGGATAACCAGTAATGGTTCTGGATTGTTTCCTTGATAGCTCTCTGCACTAGGTTGTCCTTGCTCACAGAGACTGGAGGGCAGGGGGCGGGGGGAAGAGTTTATGGACCTCTCTCTTACTCTGCCCCTCACAG
Seq C2 exon
CAACTATCAGACCTACCGAGTGCTGCTGGGCGCACACAGCCTCTCCAACCCCGGAGCTGGCTCTGCTGCTGTTCAAGTCTCTAAGCTTGTGGTCCACCAGAGGTGGAACTCCCAAAACGTCGGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579-Cela2a:NM_007919:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCAGGTCCTTTCCTC
R:
ATTGCCGACGTTTTGGGAGTT
Band lengths:
223-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: