DreINT0062421 @ danRer10
Intron Retention
Gene
ENSDARG00000007276 | ela3l
Description
elastase 3 like [Source:ZFIN;Acc:ZDB-GENE-060710-2]
Coordinates
chr5:25516274-25516669:-
Coord C1 exon
chr5:25516572-25516669
Coord A exon
chr5:25516403-25516571
Coord C2 exon
chr5:25516274-25516402
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
ATATTTTCTCTCCCGTATAGTTC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GTCTCTCTGCAGTATCAGAGTGGAAGCTCATTTTACCACACCTGCGGAGGATCTATCATTGCTGAAAACTGGGTGATGACTGCTGCTCACTGCATCAG
Seq A exon
GTAGAAAAGTCCAGCCCAGTGTTCATCTCATATATTCTTCTTCATTAGTCAGTGACAAATTCATTAGTTCATTAGTAGTAACTCCTTTTCAGATTAGTGTTGTGAACTTCTGGATACTAATCTCATTTTAAATATAAAAAATCTCATATATATTTTCTCTCCCGTATAG
Seq C2 exon
TTCTGGCCGCAACTACAGAGTGCTAGTTGGCAAGCATGACCTGTCAGTAAATGAGGAAGGATCCCAGACCATCAGCGCACAGAAGATCATTGTACACGAGAAATGGAACTCAATGTTTGTTGCTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007276:ENSDART00000009028:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGTATCAGAGTGGAAGCT
R:
AGAGCAACAAACATTGAGTTCCA
Band lengths:
219-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]