RnoINT0033823 @ rn6
Intron Retention
Gene
ENSRNOG00000021619 | Cela3b
Description
chymotrypsin-like elastase family, member 3B [Source:RGD Symbol;Acc:1307819]
Coordinates
chr5:155768058-155768411:-
Coord C1 exon
chr5:155768314-155768411
Coord A exon
chr5:155768193-155768313
Coord C2 exon
chr5:155768058-155768192
Length
121 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
TGACCTCTTCTCCCCGGCAGGAC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GTCTCCCTTCAGTATGAGAAGGATGGGAGCTTCCACCATACCTGTGGTGGCACCCTCATTGCCCCTGACTGGGTTATGACTGCAGGCCACTGCATCTC
Seq A exon
GTGAGTTCTACCCCTGTGCCGGTGCATGCCCCACTCACTCACTATCCCTGCGTGTGTCCTGGGAAGCTGGAGAGGAAGCAAGGTTGGCTCCAGGTTCAAACTGACCTCTTCTCCCCGGCAG
Seq C2 exon
GACTTCTCGCACCTACCAGGTGGTACTGGGTGAGTTTGAACGCGGTGTGGAGGAGGGCCCAGAGCAAGTGATCCCCGTCAATGCTGGAGACCTCTTTGTGCACCCCAAGTGGAACTCCAATTGTGTGAGCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021619:ENSRNOT00000036788:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.6=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGTATGAGAAGGATGGGAGCT
R:
CCACAGCTCACACAATTGGAGT
Band lengths:
226-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]