GgaINT1004028 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GFI8]
Coordinates
chr21:6524262-6524784:-
Coord C1 exon
chr21:6524648-6524784
Coord A exon
chr21:6524397-6524647
Coord C2 exon
chr21:6524262-6524396
Length
251 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGC
5' ss Score
3.76
3' ss Seq
GCATGGTGTCCTCTGGGCAGCTC
3' ss Score
6.4
Exon sequences
Seq C1 exon
TGCGGTGGGTGACACCACGCCAACCCCGTGGCCCCGCAGATCTCACTGCAGTATGAGCGCGATGGCACCTTCTCGCACACCTGCGGGGGAACCCTCATCGCGCCCGACTGGGTGATGACAGCCGCACACTGCATCTC
Seq A exon
GTGAGCCGTGGCTCTGCGGGGTGGGCTGCAGGGCGGGCACAGGGGTGGGCCGCAGGGGTGATGTGCGGTGCGTGAGGTGATGCGGCTTTGCTTGGAGGGATGCGTGGTGCAGCACTGAGGCGGTGAGGGTGCAGCGGGAGGGGGTGCAATGGGGCGAGGATGGGGGTGGGAGGGGCGTGCGGAGGTTGTTGGGGGCGCAGGACGGGCGGCCCCATCTCCTGGGCTCAGTGGGCATGGTGTCCTCTGGGCAG
Seq C2 exon
CTCCACGCTCACCTACGAGGTGGTGCTGGGTGAGTACGACATGAGCTCCGCCGAAGGCCCCGAGCAGCGCATCCCCGTCGCAGCCGACGACATCTTCGTGCACCCCAAGTGGAACAGGTTCTGCGCGGCCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027189:ENSGALT00000043604:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(14.9=97.1)
A:
NA
C2:
PF0008921=Trypsin=FE(20.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGACACCACGCCAAC
R:
GCCGCGCAGAACCTGTTC
Band lengths:
260-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]