MmuINT0070052 @ mm10
Intron Retention
Gene
ENSMUSG00000078520 | Cela3a
Description
chymotrypsin-like elastase family, member 3A [Source:MGI Symbol;Acc:MGI:3651647]
Coordinates
chr4:137405581-137405933:-
Coord C1 exon
chr4:137405836-137405933
Coord A exon
chr4:137405716-137405835
Coord C2 exon
chr4:137405581-137405715
Length
120 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGACCTCCACTCTTCTGCAGGCC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GTCTCCCTTCAGTATGAGATGGGTGGGAGCTTCCACCATACCTGTGGTGGCTCCCTCATTACCCCTGACTGGGTTCTGACTGCGGGCCACTGCATCAT
Seq A exon
GTAAGTTCCATCCCCCATGCCTTTCCCACTCACTATCCCTGCATGTGTCCTGGGCAGCTGGGACAATAGGAGAGGAGTGAGATTGGCTCCAGGCTTATACTGACCTCCACTCTTCTGCAG
Seq C2 exon
GCCTTATCTCAACTACCGGGTGGTACTTGGGGAGCATGAACATGGTGTGGAGGAGGGCTCAGAGCAGGTGATCCCCATCAATGCTGGAGAACTCTTTGTGCACCCCAAGTGGAACTCCGAATGTGTGAACTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078520:ENSMUST00000024200:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(12.9=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCAGTATGAGATGGGTGGG
R:
CCACAGTTCACACATTCGGAGT
Band lengths:
228-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types