HsaINT0033085 @ hg19
Intron Retention
Gene
ENSG00000142789 | CELA3A
Description
chymotrypsin-like elastase family, member 3A [Source:HGNC Symbol;Acc:15944]
Coordinates
chr1:22331940-22332289:+
Coord C1 exon
chr1:22331940-22332037
Coord A exon
chr1:22332038-22332154
Coord C2 exon
chr1:22332155-22332289
Length
117 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
GACCTCACCTCTGCCTGCAGGAG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTTTCCCTGCAGTATGAGAAAAGTGGAAGCTTCTACCACACGTGTGGCGGTAGCCTCATCGCCCCCGATTGGGTTGTGACTGCCGGCCACTGCATCTC
Seq A exon
GTGAGTTCTCTACCCTGTCCCTGCCTGTGGCCCTGGGCAGCGGGGGAGAGTGGGTGATGATGGGGAAGGAGGGAGGTGAGCCAGTCAGGCCCCGACTGACCTCACCTCTGCCTGCAG
Seq C2 exon
GAGGGATCTGACCTACCAGGTGGTGTTGGGTGAGTACAACCTTGCTGTGAAGGAGGGCCCCGAGCAGGTGATCCCCATCAACTCTGAGGAGCTGTTTGTGCATCCACTCTGGAACCGCTCGTGTGTGGCCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142789-CELA3A:NM_005747:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.6=100)
A:
NA
C2:
PF0008921=Trypsin=PD(47.3=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCAGTATGAGAAAAGTGGA
R:
CCACAGGCCACACACGAG
Band lengths:
229-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)