BtaINT0045204 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024497 | CTRC
Description
Bos taurus chymotrypsin C (caldecrin) (CTRC), mRNA. [Source:RefSeq mRNA;Acc:NM_001098965]
Coordinates
chr16:53299035-53300415:-
Coord C1 exon
chr16:53300318-53300415
Coord A exon
chr16:53299161-53300317
Coord C2 exon
chr16:53299035-53299160
Length
1157 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GGCCCCCTTGCTCTGTCCAGCAA
3' ss Score
5.22
Exon sequences
Seq C1 exon
ATCTCCCTCCAGTACCTCAGGGATAACACGTGGAGGCACACCTGTGGCGGCACCCTGATCACCCCCAACCACGTGCTCACAGCTGCCCACTGCATCAG
Seq A exon
GTGAGCCGGAAGTCACCCAGACACACCGTCCGCCGCCCTTCCCGGGCACACACTCCAGACACCGGGACAAGCAGGCTACGCGTACCCAGTAACTCAGTTGTCCATTTATTCATTCAGTGAGTATTTAGTGAGCGCCTACTATGTGCCAGGGAACGTGGCAGTGAAAACGCAGTTTGTGCTCTCAGGGAGCTTATTACATTCTAGTGGAAGACAGTGACAGGCCATCCAACAAGTAAACATGTAGCAAAATAAGTGGGAGTGAAGGAAAACAAAGAAGCAGGAAGAGGATAAGAAGTATGAGGGGCTCTATTTTAAATGACATGACCCGGGGAAGAGATCTCTGAAAAGGGCATGCTTGAGTCAAGATCTGAAGAAAATAAGGGAAGAAATCTTTGGTCTGGAAGTAAGGTGTCACAGGTGGAGGGAAGAGCCAATGCAAAGGTCCAGAGGAAGGAGTCCATTTGGTATGTTTGAGAAATTAAGTGGAAGCCAGTGTGGCAGGAGCGGATTGTGTGAGGGGAGAGGAGGAGGTGGCTAGAGAGGAATGCTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCCGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTGCCTTCTCCATTGTGTGAAAGTGAAAAGTGAAAGTGAAGTCGCTTAGTCACGTCCGACTTGTAGCAACCCCATGGACTGCAGCCTACCAGGCTCCTCCATCCATGGGATTTTCTAGGCAAGAGTACTGGAGTGGCTTGTCATTGCCTTCTCCGATAGAGAGGAATACAGGTGAGATAATGCAGGCCAGCAGCAGTGTGGACTAGTTCATCCTCACAACATCCCTGGCAGGTGTTTTAAGATTATCTCCACCTTACAGGAGAGGAACTGAGGCCCAAGCCTGCCCACCCAGCAGTCAGAACGGACTTGACTCCAAGACCATGGTCCTTACCCCGTGCCCTAGGAAGGGTCAATGGGGTGAACCATGCCTTCCCCCAAATGAGTCCCACAGTGACCCCGAAGCTGCATCACCAGAGCCCCAACTTCCCTCTCTACCCTGCCGACCAGTGGGGGCAGGACCCTGACTTGGCCCCCTTGCTCTGTCCAG
Seq C2 exon
CAACACCCTGACCTACCGCGTGGCCCTGGGGAAGAACAACCTGGAGGTGGAGGACGAGGCAGGCTCCCTCTACGTGGGTGTGGACACCATCTTTGTCCATGAAAAGTGGAACTCCTTCCTAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024497:ENSBTAT00000034040:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTCCAGTACCTCAGG
R:
AGGAGTTCCACTTTTCATGGACA
Band lengths:
214-1371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development