HsaINT1010334 @ hg38
Intron Retention
Gene
ENSG00000162438 | CTRC
Description
chymotrypsin C [Source:HGNC Symbol;Acc:HGNC:2523]
Coordinates
chr1:15440493-15442572:+
Coord C1 exon
chr1:15440493-15440590
Coord A exon
chr1:15440591-15442446
Coord C2 exon
chr1:15442447-15442572
Length
1856 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
GGACCCCTTCCTCTGCCCAGCAA
3' ss Score
3.78
Exon sequences
Seq C1 exon
ATCTCCCTCCAGTACCTCAAGAACGACACGTGGAGGCATACGTGTGGCGGGACTTTGATTGCTAGCAACTTCGTCCTCACTGCCGCCCACTGCATCAG
Seq A exon
GTGTGCGGGGATGATACCCTGAGACCTGGCCATCGTCCGGGGGCGGAAGCCTGATACTCTGCTTTTTCTGAGCAGCTTCTCCGCACTCCAGGCACTGGGCTACATAATCTACTCACACCCAGTAACTCAGTTGTGCATTTAGTCAGTCAAGTATTCATTGTGCATCTATTATGTGCCAGGAACCAGCAGTGAAGACAAAGTCTGTGCTCTCGGGAAGCTTATATTTTTGTGGAAGACAGAGCGGCAGACAATTAAACAAATATATAGCATCTCAGGTGATTTAAAATAATACTAATAATAAGGTATTGGCCAGGAGCAGTGGCTCACGCCTGTAATCATAGCACTCTGGGAGGCCGACGCAGGCGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGTCAACATAGTGAAACCCCGTCTCTACCGAAAATACAAAAATTAGCCAGGCGTGGTGGCGGGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATCACTTGAACACGGGAGGCAGAGGTTGCAATGAGCCGAGATGGCGCCACTGCACTCTAGCCTGGGCAACAGAGTGAGACTCTGTCTCAAAAAAATAAAAAATAAAAATAAGGTCAGAAGAGGACAAACAGAATGAGGGGTTCAGTTTTAAAAGGGATGGCCAGGGGAAGAGCTGAAAGGGGGATATTTGGCAAATATTTGGGACATTTCGGAGAGCTAAAAGGGGGTTATTTGGGCAAAGGCCTGAAGGAAGTGAGGGAGGAAATCATGGATCTAGGAGAAGGGTGTTCCAGGCGGAGGGAACAGCCATGCAAAGCCTTGGAGGAGAGACCTGTCAGTATGGTTGAGAAATAACGCGGAAGCCGGTGTGGCAGGGGCAGCGTGTGCTAGAGGAGAGTGGGAGGTGAGCTAGAGAGGAAATAAGTGCAGGTCAGTATCAGGACCTTGGCTTTGACCCTGAGTAAGATGGAGCTATTGGAAGGGTTTCTGAGCAAAGGAGAGTTGTGGGCTGACATATTTTTATATATTCCATAAAATATTTTTAATATATTTTATAAAAAATATATATTGCAACATATTTCATTTTATATATTTCATATACACTTTTTTTTTTTTTGGTAGAGACAGAGTCTCATTTAGTGGTACCATCATGGTTCACTGTAGCCTTGACCTCCTGAGCTCAAGCAATCCTCCCACCTTAGCCTCCCGAGTAGCTGGGTCTATAAGCACACGCCACCACGCATTCCCAGCTAATTTTTCTTCTTGTTTTTTGTTTGTTTGTTTGTTTTTTAACTTAGAAGCCCAAACCTCACCATAAGTTTTCTATTTTTTGTAGAGATGGGGATTTGCCATGTGGCTCAGGCTGGTCTCAAACTCCTGGCCTCAAGCAATCCCCCCGTCTCGGCTTCCCAACGTGCTGGGATTACAGGCATGAGCCAACGCACCTGGCCGGAGATATTTTTAAACCCACACTGCTGGGTTCAGAATAGACAGGAGTAGGCCAGCGTACAAGTGAGAGATAGTTAGATGGATGCCGCAACTGTGCAGGCAAGGGCGGTGGAAGCTTGGATGAGTTTATTCTCACAGCCGCCCTGGGAGTAAGTTCCAGCATTGCCTCCCCCTTACAGATGAGGGAACTGAGGCACAAGGCTACACAGCCAGGAGCAGCAAAGTCACAACATGAACCCAAGTCCCTTGACCCCAAGTCCCAGGCCCTTCCCCTCACCCTGGGAAAGGACAATGGGAACACTCTCTTCCCCCAAAATGAGTCCCACTAAAGCCCCGAGCTCCCTCTCTATCCCACTGGCTGGCAGGACCAGGGGGCCACCCTGACCTGGACCCCTTCCTCTGCCCAG
Seq C2 exon
CAACACCCGGACCTACCGTGTGGCCGTGGGAAAGAACAACCTGGAGGTGGAAGACGAAGAAGGATCCCTGTTTGTGGGTGTGGACACCATCCACGTCCACAAGAGATGGAATGCCCTCCTGTTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162438:ENST00000375949:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(13.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCCAGTACCTCAAGA
R:
GCAACAGGAGGGCATTCCATC
Band lengths:
222-2078
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains