BtaINT0055546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53277250-53279012:-
Coord C1 exon
chr16:53278876-53279012
Coord A exon
chr16:53277396-53278875
Coord C2 exon
chr16:53277250-53277395
Length
1480 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
TTCTCTCTTGTCTCATGCAGGCA
3' ss Score
10.55
Exon sequences
Seq C1 exon
GAATGACATTGCCCTGCTCAAACTGGCCAGCTCTGTCCCCCTGACTGACAAGATCCAGCTGGGCTGCCTGCCGCCTGCCGGCACCATCCTGCCCAACAACTACGTCTGCTATGTCACGGGCTGGGGAAGACTGCAGA
Seq A exon
GTAAGTGGGTGCTGGGAGCCCCATGGCTCCCAAGGGAGGTGGGCGATGTCACCCCGGTTCAGTCAGGGGTTTTCTCTGCGCTCATTATCCAAGGAGTCTGGAAGAAGTGCCTGCTGCCTTGGAGAAGAACGATAGTGTAGACAGACAAGGCCTTCCCAGGTGGCTCAGTGGGTCAAGAATCCACCTGCAATGCAGGAGACGAGATGCAGGAGACAAGCGTTCATCTCCAGGGTTGCGAAGATGCCCTGGAGGAGGACACGGCAACCCACTCCAGTACTCTTGCCAGAGAGGCCTATGGACAGAGAAGCCTGGTGGGCTACAGGCCATAGGGTCGCATAGAGTTGGACACAACTAAAGTGACTGAGCCCGCACACATGCATGCACATAGACAGACAAGAATTCAGAATGCCTGGGTTCAAATCCCAGTTCCTCCACTTATTTGCTGTGTGGCCACCTGCAGATTGCTTAGCCTTTCCACACTGAAGTTTTCTCATCTGTAAAATGGGGATAATAACAGGCTCTGTATCACAAGGTTGTCGATAATCCATTGGAAGCACTTAGCCCAGTGCCTGGCACCTGGTGCTCTGTGTTAGTTGTTGTCACTGTCACCATGACTACATGACATCTGGCACAGAAGTCCCTCCTATGGCCCAAAGCCAGGGCCTAAAATAGCATTCACTCCATGACCTCAGGATTCTACAGCTCCACAAAGGTCCCTGGGGTCCTCATCAGAGTCTCCCCTTCCCATCTCAAACCTCACTCGTCATGTGCCGCCTTACCATGCCACTCAGACTCTGATTACGTGTGGGTCTCCCTTTGACATAAGCCCTAAGGGTCAGAAATCCAATGACAGTAAGTCACCAAGAAGGAGCAGAGGACCTGCCCTCCCCTTGGGAAATCACCAGAGGTTTGGAAAATTCCAGGAAGGCCCATGCAAATAAGTGACTATTTTTTCTTATAATGACAAACCTATACGTGACATTTTTTTTACAGAGGTACGTCGACACACATACACTCAAATTGATATCACTCTCTTGCCTGGCTTATCTGCAAAAATAGGACCCACGGACACTTGGCAGAAGTGAGAAGTGGAGATGTATCTCTTACTTATTGAAATACAAATTCAGCCACTGGTTCATTTATCAGAAAACACCCAGGCAGAATGTATTTCACTGAAGGCAGCAAGAACCAGGGAAGGGTCCAAGTGCTTGACTTTATTCCCAGCTATGTTGGCCACTAGCTGTGTAACCTCAGCTCGTTGGCTTAGCTGGAGTCAGGTGTTCACCCCTGCACCAATCAGCAGTGGCCAATCAACTGTGAGGATACAGTGTAGGCAAATTGGCTGCTTCCATGGCAACCCTATGGATGGAAGGAAGGAAAAGGGACCAGAGAAAAAGGGGCTGGGCAGAAATTTCAGTAGGCATCCCCTACTTGCTTTTTCCCTTTGTCCCTGTAACACCTTCTCTCTTGTCTCATGCAG
Seq C2 exon
GCAATGGAGCTCTTCCTGACATCCTGCAGCAGGGCAAGCTGCTCGTTGTGGACTATGCCACATGCTCCCAACCTAGTTGGTGGGGCAGCACTGTGAAGACCAATATGATCTGTGCTGGGGGAGACGGCGTGACCTCCAGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496:ENSBTAT00000034039:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGCCCTGCTCAAACTGG
R:
ATTGCAGCTGGAGGTCACG
Band lengths:
278-1758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development