MmuINT0034149 @ mm10
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141818982-141821461:-
Coord C1 exon
chr4:141821325-141821461
Coord A exon
chr4:141819128-141821324
Coord C2 exon
chr4:141818982-141819127
Length
2197 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
CTCTCCGTGGTCTCATTCAGCCA
3' ss Score
6.29
Exon sequences
Seq C1 exon
CTATGACATTGCCTTAATCAAACTGGCCAGCCCAGTGACCCTGAGCAAGAACATCCAGACAGCTTGCCTCCCACCCGCTGGCACCATTCTCCCGAGAAACTATGTCTGCTATGTCACAGGCTGGGGCCTGCTGCAGA
Seq A exon
GTAAGTATAAGCAAGCAGGGGACCCCCCAAGGCCTGGCAGAGAAGGGAGTTGCTGGTACCTCTGTCCCTAGGGTGTTTGGCTGCCTTAGAGGGACAGGCTAGTGGAGACTGGTAACTATGTCTGGGGTTCAAATCTCAGCATTCTTAGTTGTATGATTCAGGCACATTACTGAGCCCCTATGGTGACTTCCTCATCTGTAAAATGGGAGAGAACAGCACAGGGAGTGGGGTAGTGGCTATATAGGGTTGACAAGGTACAGAGAAGACAAGAGACAGAGAAGGCGAGAGAAGACAGTCCGTGGAAGCACTAGTGACTACTAGTAAAGACTAGTACTAACTAGTATCCACTGTGCATTGACCACACTGTGTCTTTCATGTGGCCCAAGGCCAGAGCTCAGAATAACATGTACAAGGAGACCTCAGGGTTCCGGGACACCATGAAATTCCCAAGGCCCTCAGATTGTCTTCTTGCTGCCTAAAGCTGGGTTTGGCTATCCCATGTCTTCTCATTGGATCGGTTAGTGCTCTGATCACTGGTGACTGGATCAGGGACGAGTAATTGACTGGAGCTAAGCCAATAGGAACTGGAAATAGAGAAGACACTCTCCTGACAAAAAACAGTTTGCAGTGGTGGCCATTTTCTTCTCCATAGAGAGCAATGATGTCCAACAGCAAACAAGGAATTTGGGAGAGAGAGGCAGGGAGGTAGCCCAGGCTCCTTGGATATACACACTTTGCTCATGCTGGGCCCTCTGTAACGCCTATCTCCTCATTTGTAAAGTATAAGGTCTGTGGTGATGGTCACAGATATATCTGAAGTGCTTTGGACCCGGGAAAGCGTTAAGCAAGTATAATTAGAGCAGTCGTCCATGTCCCCTTCGCCAAACAGGAATGAATATCACTGTGAGGACTGGCCCGTTTATAGAGCATGATACACTGTGATTAAGGAATGATAATGAGGTGGGGATGTTGAGGAACTCAGTTGGTAAACAGCTTACCTTGCAAGCATGGGGACACATGTCCTCAGAACCGGTGAAAGAAGCCAGGTGTGGTTGTGCGTACTTAAGATCCCAACTATGGGTAAGTAGAAACAGGCCGATTCCTGGGGTTCAATAGCCAGCAGCATCATCCAATTGGGTGAGCCCTAAGCTAAGGATAGACTCTAACTTAAAAACTAACTTAGATGAGGCTAGAGAAGCGGTTCTCAACCTGTGGGTCGTGACCCCACTGTGATTGTATATCAGATGTCCTGTTTATCAGATATTTACATTATTATTCATAACAGTAGCAAAATTACAGTTATGAAGTAGCAATAAATAATTTTCATGGTTGGGTGTTACCAGGACACGAACTATATGTATTAAAGAGTCACAGCATTAGGAAGGTTGAGAACCAGTGCACTACAGGTTGACTTCTGACATCCACATACACACACACACACACACACACAGAATTAAATGACGTTTATCCTGGCCAACCATGGCAGTGATGTAGACAATGTCACTTGGGTCATGAGGAAAACTACCCTGACCCCGGAGTATTTTTCCAGCTCTCGACAGCTCTTTCTCATAGGAAAGTAAGAGAAACCTGTGGAACTAGCCCCGCAAAAAGAGGAATTCTAAGCCAAGGGCAGACACATAGCTAGATGTCAGGAACATTCTAGATCAAGGCCGTGTGGAGCCTGGAAGAAACCAGAAACTCTCCTTCCGAGTCTTTTCTGCCTCATCCTTCTCCAACAAAAGAAAATGGCAGCCACTGCCCACGCCAGACTCCCAGAGCAAGGAGCTCATTGGCTTTAGGGTTGAGTCAGATGCTCACCCCGAACCAATCACCAGTAAGTAGCCAGACCACCAACCAATCAACTGAGGACACAATGCAAACTAACCTGGCCAAATTCAGCAACCTTGTGGAAGGGACAGGGTCACCTGGACCGGAAAGGGAGGGGTCGACAGAAGACACAGCAGCAACGCTTCTCCTTCTCATACCCCTGTGTTGTATACATAGCTAACAAGCTCCAAGGATCCTCCTGTCTCTGTCTCCGGCCCCACCCCCACAGCCACACGTGGCTCTTTCCACACGCACTGGCTATCTGAACTCAGGTCTCCACAATTTCAAGTTAAGCACATCCTCGTTTGTCCCATGGTTTCCTCTTTACTTGGGAGCCCCCCTCATGCCTTCTCTCCGTGGTCTCATTCAG
Seq C2 exon
CCAATGGGAACAGTCCTGACACCCTGAGGCAGGGCCGCCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCTGTGAAGTCCAGCATGGTGTGCGCTGGTGGCGACGGCGTGACCTCCAGCTGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579:ENSMUST00000102481:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types