BtaINT0055547 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024496 | ELA2A
Description
Bos taurus chymotrypsin-like elastase family, member 2A (CELA2A), mRNA. [Source:RefSeq mRNA;Acc:NM_174714]
Coordinates
chr16:53275942-53277395:-
Coord C1 exon
chr16:53277250-53277395
Coord A exon
chr16:53276095-53277249
Coord C2 exon
chr16:53275942-53276094
Length
1155 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ACAACTCTGCTCTTTCCCAGGGG
3' ss Score
8
Exon sequences
Seq C1 exon
GCAATGGAGCTCTTCCTGACATCCTGCAGCAGGGCAAGCTGCTCGTTGTGGACTATGCCACATGCTCCCAACCTAGTTGGTGGGGCAGCACTGTGAAGACCAATATGATCTGTGCTGGGGGAGACGGCGTGACCTCCAGCTGCAAT
Seq A exon
GTGAGTCCAGGAAGTCACCCCCCGCCAACAAAATGGAGCTGAAGGTGGGGAGAGTCTTTCGGGGTCCTAGACTCTATCCTCACACCTGCTGGCAAAAGTGCTAGGAAGCAGCTTCACATGTTTGAGACCCTGACCTTTGTCCTTGCAGTCTCCAGAAAAGATGTTTTGAGATTCTCCTTGTAATAGTGTCTACCCTTTCACTGCTGGAAAGTCCTGCCTTGAGTCCCATTGAGGGCTCTCATTACTGTCATCACTCTTATTCTTTCCTCTGTGTAGAAAGAGAGACAAGGGGACCTATTTGTTGAGTCAAGACCTTTCTGAGATGATTTCAAGTTTATCTGTTGAATTAACCCCATTCGTGATGGTCGCTTCAGGGTAGCTACCACACAGCCTTTCTAGACACACCATCTTAACCAATAGACTTGCTATGTGGTGGACTTTGCATCATGAGCACAGAGCAGGAAGGAGCCTCATGTGTCCTTCAGATCACACTGGAGACCTCCACTTTCTGCCCATGCAGACCAGCTCCCAGGAAACTCCCCCAGTGGGAGGAAACTCCCAGTGGTGGTGGAGCGCATGAATTTCTAACTCAGGGACACATCTCAGCTCCTTCACTTACTGCCTGAACAACCTCAGACTGAGGGGTTTTGCTTTTCTCTTTGGTGAAATGGTGTGTGTGTTAGTCGCTCAGTTGTGTCCAATTCTCTGTGACCAAGTGGACTATAGCCCTCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAGTACTGGGATGGGTTGCCATTCCCTTCTCCAGGGGATCTTCCTGACCCAGGGATCGAACCCAGGTGTCCTCCATTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGTAGCAATACTTACCTTGTAGATTTTTGTGAAGATGAAATGGAATAAGGCCTATAAAGTGCTCAGCACCATTCCAGGCACCCAGAAAGAGCAAGGGCTAGTTATGGTGCCATCTTGAGCTGTGACTGCAAGGGCTGGCCTCGGGGAACTTGGCGACCCACATGGAACAATATAAATACACTGCCAGTGTGTAAAACAAGGGCTCTGAAGAGCAGCCCCTGCCCCGCCCACCCCCCTGCCCAAGCCCCCAGGCCCCTCCTGACACAACTCTGCTCTTTCCCAG
Seq C2 exon
GGGGACTCCGGCGGGCCACTGAACTGCCAGGCGGCTAACGGCCAGTGGCAGGTGCACGGCATAGTCAGCTTCGGGTCCTCCCTCGGCTGCAACTACTACCGCAAGCCCTCCGTCTTCACCCGGGTCTCCAACTACAATGACTGGATCAGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024496:ENSBTAT00000034039:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGAGCTCTTCCTGACA
R:
ACTGATCCAGTCATTGTAGTTGGA
Band lengths:
296-1451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development