MmuINT0034150 @ mm10
Intron Retention
Gene
ENSMUSG00000058579 | Cela2a
Description
chymotrypsin-like elastase family, member 2A [Source:MGI Symbol;Acc:MGI:95316]
Coordinates
chr4:141817865-141819127:-
Coord C1 exon
chr4:141818982-141819127
Coord A exon
chr4:141818018-141818981
Coord C2 exon
chr4:141817865-141818017
Length
964 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCCAACTCTGGCTTCTACAGGGG
3' ss Score
7.69
Exon sequences
Seq C1 exon
CCAATGGGAACAGTCCTGACACCCTGAGGCAGGGCCGCCTGCTGGTTGTGGACTATGCCACCTGCTCCAGCGCTAGCTGGTGGGGAAGCTCTGTGAAGTCCAGCATGGTGTGCGCTGGTGGCGACGGCGTGACCTCCAGCTGCAAT
Seq A exon
GTGAGTATCCCGAGTCAGGTGTCTAAGGCAAAAGGCGGCACAGGTGTGGTGTCGCGGGGAGTTGGTGGTAGGGAGGTGTCCTAGGATCCATCTTTTCCTTCCTTCCTGGGCAGGAGCCTTGGAAACTCTTCTGGAACATTTCAGAACCTGTCCGTTGTTCTCCTCGTCCCCAGAAAAGATGTTATTAGTACCATCGCCCTGTAGCATTCTCATTACCTAACTGCTAGGAAGTCTTTAGTTCTTTGGATCTCACCCAGATCTCTCGTTACTGTCATCTGACAGTACCGGCCCAAAGTGGCCCCTTCGGGAGCTGCTACAGAAGTCTTCTTAAAGACAGTGTCAGGAACCAAAGGACTTCTTGGTACAGGCAGATTCTACAGAGGAAGACAGAGGGGAAAGGGAGCCCACACCTTCAGTTGCACTCAGTGCCTTGACTAGACCCACACCCTCACACTCTACTGTCTCCCTCCAACAAGTCCCATTCTCTGAACCGTTGCCTTCTCTACTGAACCAGAGAAGCTCATGCTGGCCTGATGGGCTCTCATGAGGGTGAAAGAAAAGGAAGCATAGAAAAGGTATAGCTGCCAACTTGGAGCACATACCTACTGCTCCAGCACTGGGGAGGGTGAGACAGGGGGATTGTTGCACATTTTAGCGTAGCCTGTGCTACATAAAAGGCCTTGGTTTTTTTTTTTTAATTAAATAAGTAAGTAAGTTAAAGATGAGCAGAGCCAACATGATAATCCACACCTGTAATGGCAGCATTTATGAAGGTGAAGCAGGAGAGGCACTTTGTGAGGCTCTTTATCCAAAAAATAAATACCAGCTCCTAGAGGCAAGGTACCACCACCTGTAACAATAAGGCTGGCTTTAGAGGACATTGTCCTTGTTGAACAACATACTAAAAACCAGGCCCCTCTGGGCACCCTTTTCCTCTCTTCATGCCCAACTCTGGCTTCTACAG
Seq C2 exon
GGGGACTCTGGCGGACCACTGAATTGCCGGGCATCTAATGGCCAGTGGCAGGTGCATGGCATCGTGAGCTTCGGCTCCTCTCTGGGCTGCAACTACCCCCGCAAGCCATCCGTCTTCACCAGGGTCTCCAACTACATTGACTGGATCAACTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058579:ENSMUST00000102481:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACAGTCCTGACACCC
R:
CCAGTCAATGTAGTTGGAGACCC
Band lengths:
286-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types