HsaINT1007172 @ hg38
Intron Retention
Gene
ENSG00000142615 | CELA2A
Description
chymotrypsin like elastase family member 2A [Source:HGNC Symbol;Acc:HGNC:24609]
Coordinates
chr1:15465999-15467538:+
Coord C1 exon
chr1:15465999-15466144
Coord A exon
chr1:15466145-15467385
Coord C2 exon
chr1:15467386-15467538
Length
1241 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
ATAACTCTGGCCTTCCTCAGGGA
3' ss Score
7.84
Exon sequences
Seq C1 exon
CCAACGGGGCTGTTCCTGATGTCCTGCAGCAGGGCCGGTTGCTGGTTGTGGACTATGCCACCTGCTCCAGCTCTGCCTGGTGGGGCAGCAGCGTGAAAACCAGTATGATCTGTGCTGGGGGTGATGGCGTGATCTCCAGCTGCAAC
Seq A exon
GTGAGTACCAAAATCAGGGGCTCCGCTCCATGACAAAATGTGGCTGGGGATAAGGCTATAGAGGTCCATCCCTCCATAGGTCCATCCTCCCACCTCCTGGCAGAATTACCCCGAAACATGTTCCAGATATATCTTTGGCCAGGCACGGTGGCTCACACCTGTAATCCCAGCACTTTGAGAGGCCAGGCGGGCAGACCACTTGAGGTCAGCAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTTGTGTCTACTAAAACTAAAAAAATTAGCCGGGCATGGTGGCAGGCGCCTGTACTCACAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTGAACCCATGAGGCGGAGGTTGCAGTGAGCTGAGATCACACCGCTGCAATCCAGCCTGGGTGACAGAGCGAAACTCAAAAAAAAAAACAAAAAAACTTGATCTTGGTTCTTTTTTGTTCTTGTTTTGAGATGTTTTGAGATTCTCCTTGTAGTATCCACCCATCTCACTGCTGGGAAGTCCTTCCCTGGGTCTCATCAAGGTCTCTCGTGACTGTCACTATGTATCCTTTCCTCTATGCTGGAAGGGAACCAAAGGAAAGTATTCCCTGGCTTAGGGCCTTTCTACGATGACTTCTGGTTTTTCTGTTGAATTAGTCTCATCAATGGCGCAGCGTGTCCCCTCCAGGTAGCTGCCACGGAAACCTTCCTGGAGACAGTGTCTTAACCACCAGGAACTGCTCTGTGTTGGACTTAGCAGTGAAGTGGGGATGGAGTAGGAAAGAGTTCCACACGCCCTTCAGATCACACTGTGCCCTACACACTCTGCCCACATAGACCACCCGCGGGAAGACGGAACCAGTGGGGAAGAGCCTGGCAGCTGAAGTCTGGGATGTGGCCTCAGCTCCTTTACAAACTGCCTGTGCAACCTTGGGCAAGTCCCAACCTCTCAACACTCCAGTTTCTCCTCTTCCGTGGCCTGGGGATGCTACGAATATTTACCTCATAGGATTTTGTGAGGATTAATGAGATGAGGCATAGAACATGCTTAGCTCAGCTCTGGCCACACAGGAAGAATAAGTGTTGGCTCTTGTTGGAATTATGGTACCACCTTGGGCTATGACCACAAGGGTCAGCTTCCGAGGACAGTGACCTGCAGCAGAACAATAGAAATGCATTGAGAACAATGGTTCCAATGGGCAGCCCCTTCCTCTCCCTTTACCTGCCTATAACTCTGGCCTTCCTCAG
Seq C2 exon
GGAGACTCTGGCGGGCCACTGAACTGTCAGGCGTCTGACGGCCGGTGGCAGGTGCACGGCATCGTCAGCTTCGGGTCTCGCCTCGGCTGCAACTACTACCACAAGCCCTCCGTCTTCACGCGGGTCTCCAATTACATCGACTGGATCAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142615:ENST00000359621:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGGGCTGTTCCTGATG
R:
TTGATCCAGTCGATGTAATTGGAGAC
Band lengths:
294-1535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains