GgaINT0134441 @ galGal4
Intron Retention
Gene
ENSGALG00000004568 | CELA2A
Description
chymotrypsin-like elastase family member 2A precursor [Source:RefSeq peptide;Acc:NP_001027562]
Coordinates
chr21:5546203-5546623:+
Coord C1 exon
chr21:5546203-5546348
Coord A exon
chr21:5546349-5546470
Coord C2 exon
chr21:5546471-5546623
Length
122 bp
Sequences
Splice sites
5' ss Seq
AACGTGAGT
5' ss Score
9.54
3' ss Seq
ACGTTTCCTCTTCTTCTCAGGGG
3' ss Score
9.62
Exon sequences
Seq C1 exon
CAAATGGAGCTCTCCCAGATGAACTGCAGCAAGGCCTGTTGCTGGTAGTAGATTATGCAACTTGTTCCAAGACCAACTGGTGGGGAAGCACGGTGAAAACCAACATGGTGTGCGCTGGTGGAGATGGAATCACCTCCAGTTGTAAC
Seq A exon
GTGAGTCCAGAGAACACCACTCTCAGGGCTTGGCTTAACACAACCCGGCCTGATGGGAAGGAAAGCTTAAAACACAAGGAAGAACTACTCACGCCATTAACCACGTTTCCTCTTCTTCTCAG
Seq C2 exon
GGGGACTCTGGTGGTCCACTGAACTGTCAAAATGCAGATGGCGCATGGGAAGTGCATGGTATTGTCAGCTTTGGCTCTTCTCTTGGCTGCAACTATTATCAGAAGCCTTCTGTCTTCACCCGGGTCTCTGCTTTCGACAGCTGGATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004568:ENSGALT00000007270:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.5=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.5=94.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCAGATGAACTGCAGCAAG
R:
CGGGTGAAGACAGAAGGCTTC
Band lengths:
256-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]